| 1 | Sat 6 Aug 2016 | 1-1 v Maidstone UnitedMaidstone United 1-1 York City | National League |
| 2 | Tue 9 Aug 2016 | 1-0 v Macclesfield TownYork City 1-0 Macclesfield Town | National League |
| 3 | Sat 13 Aug 2016 | 1-1 v Boreham WoodYork City 1-1 Boreham Wood | National League |
| 4 | Sat 20 Aug 2016 | 1-2 v Forest Green RoversForest Green Rovers 2-1 York City | National League |
| 5 | Sat 27 Aug 2016 | 4-1 v WokingYork City 4-1 Woking | National League |
| 6 | Mon 29 Aug 2016 | 1-2 v WrexhamWrexham 2-1 York City | National League |
| 7 | Sat 3 Sep 2016 | 4-0 v Solihull MoorsYork City 4-0 Solihull Moors | National League |
| 8 | Sat 10 Sep 2016 | 0-2 v Torquay UnitedTorquay United 2-0 York City | National League |
| 9 | Tue 13 Sep 2016 | 0-0 v Tranmere RoversYork City 0-0 Tranmere Rovers | National League |
| 10 | Sat 17 Sep 2016 | 0-1 v Dover AthleticYork City 0-1 Dover Athletic | National League |
| 11 | Sat 1 Oct 2016 | 0-1 v Aldershot TownYork City 0-1 Aldershot Town | National League |
| 12 | Tue 4 Oct 2016 | 211-6 v GuiseleyGuiseley 6-1 York City | National League |
| 13 | Sat 22 Oct 2016 | 1-1 v ChesterYork City 1-1 Chester | National League |
| 14 | Tue 25 Oct 2016 | 0-2 v SouthportSouthport 2-0 York City | National League |
| 15 | Sat 19 Nov 2016 | 0-2 v Dagenham & RedbridgeYork City 0-2 Dagenham & Redbridge | National League |
| 16 | Sat 26 Nov 2016 | 0-3 v BromleyBromley 3-0 York City | National League |
| 17 | Tue 29 Nov 2016 | 1-1 v GuiseleyYork City 1-1 Guiseley | National League |
| 18 | Sat 21 Jan 2017 | 2-1 v BarrowYork City 2-1 Barrow | National League |
| 19 | Sat 4 Feb 2017 | 3-0 v Nuneaton TownNuneaton Town 0-3 York City | FA Trophy Third Round |
| 20 | Tue 28 Feb 2017 | 1-1 v Lincoln CityLincoln City 1-1 York City | National League |
| 21 | Sat 11 Mar 2017 | 2-2 v Sutton UnitedSutton United 2-2 York City | National League |
| 22 | Tue 14 Mar 2017 | 2-1 v Lincoln CityYork City 2-1 Lincoln City | FA Trophy Semi Final |
| 23 | Sat 25 Mar 2017 | 0-1 v Dagenham & RedbridgeDagenham & Redbridge 1-0 York City | National League |
| 24 | Sat 29 Apr 2017 | 2-2 v Forest Green RoversYork City 2-2 Forest Green Rovers | National League |
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