| 1 | Sat 6 Aug 2016 | 12-0 v BromleyBromley 0-2 Tranmere Rovers | National League |
| 2 | Tue 9 Aug 2016 | 12-0 v BarrowTranmere Rovers 2-0 Barrow | National League |
| 3 | Sat 13 Aug 2016 | 12-1 v EastleighTranmere Rovers 2-1 Eastleigh | National League |
| 4 | Tue 16 Aug 2016 | 11-0 v Boreham WoodBoreham Wood 0-1 Tranmere Rovers | National League |
| 5 | Sat 20 Aug 2016 | 12-1 v Maidstone UnitedTranmere Rovers 2-1 Maidstone United | National League |
| 6 | Sat 27 Aug 2016 | 11-1 v SouthportSouthport 1-1 Tranmere Rovers | National League |
| 7 | Mon 29 Aug 2016 | 11-0 v GuiseleyTranmere Rovers 1-0 Guiseley | National League |
| 8 | Sat 3 Sep 2016 | 11-3 v Aldershot TownAldershot Town 3-1 Tranmere Rovers | National League |
| 9 | Sat 10 Sep 2016 | 10-1 v Lincoln CityTranmere Rovers 0-1 Lincoln City | National League |
| 10 | Tue 13 Sep 2016 | 10-0 v York CityYork City 0-0 Tranmere Rovers | National League |
| 11 | Sat 17 Sep 2016 | 10-1 v Sutton UnitedSutton United 1-0 Tranmere Rovers | National League |
| 12 | Sat 24 Sep 2016 | 13-1 v WokingTranmere Rovers 3-1 Woking | National League |
| 13 | Sat 1 Oct 2016 | 10-0 v Dagenham & RedbridgeDagenham & Redbridge 0-0 Tranmere Rovers | National League |
| 14 | Tue 4 Oct 2016 | 10-1 v GatesheadTranmere Rovers 0-1 Gateshead | National League |
| 15 | Sat 8 Oct 2016 | 12-0 v WrexhamTranmere Rovers 2-0 Wrexham | National League |
| 16 | Sat 22 Oct 2016 | 13-0 v Solihull MoorsSolihull Moors 0-3 Tranmere Rovers | National League |
| 17 | Tue 25 Oct 2016 | 11-0 v North Ferriby UnitedTranmere Rovers 1-0 North Ferriby United | National League |
| 18 | Sat 29 Oct 2016 | 14-1 v Dover AthleticDover Athletic 1-4 Tranmere Rovers | National League |
| 19 | Sat 12 Nov 2016 | 12-2 v ChesterTranmere Rovers 2-2 Chester | National League |
| 20 | Sat 19 Nov 2016 | 11-0 v Braintree TownBraintree Town 0-1 Tranmere Rovers | National League |
| 21 | Tue 22 Nov 2016 | 12-2 v Forest Green RoversForest Green Rovers 2-2 Tranmere Rovers | National League |
| 22 | Sat 26 Nov 2016 | 12-1 v Torquay UnitedTranmere Rovers 2-1 Torquay United | National League |
| 23 | Tue 29 Nov 2016 | 11-0 v GatesheadGateshead 0-1 Tranmere Rovers | National League |
| 24 | Sat 3 Dec 2016 | 11-0 v York CityTranmere Rovers 1-0 York City | National League |
| 25 | Sat 17 Dec 2016 | 11-2 v Lincoln CityLincoln City 2-1 Tranmere Rovers | National League |
| 26 | Mon 26 Dec 2016 | 11-0 v Macclesfield TownTranmere Rovers 1-0 Macclesfield Town | National League |
| 27 | Sun 1 Jan 2017 | 12-4 v Macclesfield TownMacclesfield Town 4-2 Tranmere Rovers | National League |
| 28 | Sat 14 Jan 2017 | 14-1 v South ParkTranmere Rovers 4-1 South Park | FA Trophy Second Round |
| 29 | Sat 28 Jan 2017 | 10-2 v Dagenham & RedbridgeTranmere Rovers 0-2 Dagenham & Redbridge | National League |
| 30 | Tue 31 Jan 2017 | 13-0 v WokingWoking 0-3 Tranmere Rovers | National League |
| 31 | Sat 4 Feb 2017 | 11-1 v Chelmsford CityTranmere Rovers 1-1 Chelmsford City | FA Trophy Third Round |
| 32 | Sat 11 Feb 2017 | 12-2 v BromleyTranmere Rovers 2-2 Bromley | National League |
| 33 | Sat 18 Feb 2017 | 12-0 v EastleighEastleigh 0-2 Tranmere Rovers | National League |
| 34 | Tue 21 Feb 2017 | 12-1 v Boreham WoodTranmere Rovers 2-1 Boreham Wood | National League |
| 35 | Sat 25 Feb 2017 | 15-1 v BarrowTranmere Rovers 5-1 Barrow | FA Trophy Fourth Round |
| 36 | Fri 3 Mar 2017 | 13-2 v ChesterChester 2-3 Tranmere Rovers | National League |
| 37 | Tue 7 Mar 2017 | 11-2 v BarrowBarrow 2-1 Tranmere Rovers | National League |
| 38 | Sat 11 Mar 2017 | 11-1 v Macclesfield TownMacclesfield Town 1-1 Tranmere Rovers | FA Trophy Semi Final |
| 39 | Tue 14 Mar 2017 | 10-0 v Torquay UnitedTorquay United 0-0 Tranmere Rovers | National League |
| 40 | Tue 21 Mar 2017 | 14-1 v North Ferriby UnitedNorth Ferriby United 1-4 Tranmere Rovers | National League |
| 41 | Sat 25 Mar 2017 | 11-0 v Braintree TownTranmere Rovers 1-0 Braintree Town | National League |
| 42 | Tue 28 Mar 2017 | 11-0 v Dover AthleticTranmere Rovers 1-0 Dover Athletic | National League |
| 43 | Sat 1 Apr 2017 | 11-0 v WrexhamWrexham 0-1 Tranmere Rovers | National League |
| 44 | Tue 4 Apr 2017 | 13-2 v Sutton UnitedTranmere Rovers 3-2 Sutton United | National League |
| 45 | Sat 8 Apr 2017 | 19-0 v Solihull MoorsTranmere Rovers 9-0 Solihull Moors | National League |
| 46 | Tue 11 Apr 2017 | 10-1 v Forest Green RoversTranmere Rovers 0-1 Forest Green Rovers | National League |
| 47 | Fri 14 Apr 2017 | 12-2 v Aldershot TownTranmere Rovers 2-2 Aldershot Town | National League |
| 48 | Mon 17 Apr 2017 | 12-1 v GuiseleyGuiseley 1-2 Tranmere Rovers | National League |
| 49 | Sat 22 Apr 2017 | 14-1 v SouthportTranmere Rovers 4-1 Southport | National League |
| 50 | Wed 3 May 2017 | 13-0 v Aldershot TownAldershot Town 0-3 Tranmere Rovers | National League Play-off |
| 51 | Sat 6 May 2017 | 12-2 v Aldershot TownTranmere Rovers 2-2 Aldershot Town | National League Play-off |
| 52 | Sun 14 May 2017 | 11-3 v Forest Green RoversTranmere Rovers 1-3 Forest Green Rovers | National League Play-off Final |
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