| 1 | Sat 12 Nov 2016 | 2-2 v ChesterTranmere Rovers 2-2 Chester | National League |
| 2 | Sat 19 Nov 2016 | 1-0 v Braintree TownBraintree Town 0-1 Tranmere Rovers | National League |
| 3 | Tue 22 Nov 2016 | 2-2 v Forest Green RoversForest Green Rovers 2-2 Tranmere Rovers | National League |
| 4 | Sat 26 Nov 2016 | 2-1 v Torquay UnitedTranmere Rovers 2-1 Torquay United | National League |
| 5 | Tue 29 Nov 2016 | 1-0 v GatesheadGateshead 0-1 Tranmere Rovers | National League |
| 6 | Sat 3 Dec 2016 | 1-0 v York CityTranmere Rovers 1-0 York City | National League |
| 7 | Sat 17 Dec 2016 | 1-2 v Lincoln CityLincoln City 2-1 Tranmere Rovers | National League |
| 8 | Mon 26 Dec 2016 | 1-0 v Macclesfield TownTranmere Rovers 1-0 Macclesfield Town | National League |
| 9 | Sun 1 Jan 2017 | 2-4 v Macclesfield TownMacclesfield Town 4-2 Tranmere Rovers | National League |
| 10 | Sat 14 Jan 2017 | 194-1 v South ParkTranmere Rovers 4-1 South Park | FA Trophy Second Round |
| 11 | Sat 28 Jan 2017 | 190-2 v Dagenham & RedbridgeTranmere Rovers 0-2 Dagenham & Redbridge | National League |
| 12 | Tue 31 Jan 2017 | 3-0 v WokingWoking 0-3 Tranmere Rovers | National League |
| 13 | Sat 11 Feb 2017 | 192-2 v BromleyTranmere Rovers 2-2 Bromley | National League |
| 14 | Tue 21 Feb 2017 | 192-1 v Boreham WoodTranmere Rovers 2-1 Boreham Wood | National League |
| 15 | Sat 25 Feb 2017 | 195-1 v BarrowTranmere Rovers 5-1 Barrow | FA Trophy Fourth Round |
| 16 | Fri 3 Mar 2017 | 193-2 v ChesterChester 2-3 Tranmere Rovers | National League |
| 17 | Tue 7 Mar 2017 | 191-2 v BarrowBarrow 2-1 Tranmere Rovers | National League |
| 18 | Tue 14 Mar 2017 | 190-0 v Torquay UnitedTorquay United 0-0 Tranmere Rovers | National League |
| 19 | Tue 21 Mar 2017 | 194-1 v North Ferriby UnitedNorth Ferriby United 1-4 Tranmere Rovers | National League |
| 20 | Tue 28 Mar 2017 | 191-0 v Dover AthleticTranmere Rovers 1-0 Dover Athletic | National League |
| 21 | Sat 1 Apr 2017 | 191-0 v WrexhamWrexham 0-1 Tranmere Rovers | National League |
| 22 | Mon 17 Apr 2017 | 192-1 v GuiseleyGuiseley 1-2 Tranmere Rovers | National League |
| 23 | Sat 22 Apr 2017 | 194-1 v SouthportTranmere Rovers 4-1 Southport | National League |
| 24 | Wed 3 May 2017 | 193-0 v Aldershot TownAldershot Town 0-3 Tranmere Rovers | National League Play-off |
| 25 | Sat 6 May 2017 | 192-2 v Aldershot TownTranmere Rovers 2-2 Aldershot Town | National League Play-off |
| 26 | Sun 14 May 2017 | 191-3 v Forest Green RoversTranmere Rovers 1-3 Forest Green Rovers | National League Play-off Final |
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