| 1 | Tue 14 Aug 2012 | 20-4 v Leicester CityTorquay United 0-4 Leicester City | Capital One Cup First Round |
| 2 | Sat 18 Aug 2012 | 20-0 v Fleetwood TownFleetwood Town 0-0 Torquay United | npower League Two |
| 3 | Tue 21 Aug 2012 | 22-2 v Cheltenham TownTorquay United 2-2 Cheltenham Town | npower League Two |
| 4 | Sat 25 Aug 2012 | 24-2 v RochdaleTorquay United 4-2 Rochdale | npower League Two |
| 5 | Sat 1 Sep 2012 | 21-1 v Port ValePort Vale 1-1 Torquay United | npower League Two |
| 6 | Sat 8 Sep 2012 | 20-0 v Plymouth ArgyleTorquay United 0-0 Plymouth Argyle | npower League Two |
| 7 | Sat 15 Sep 2012 | 20-1 v Rotherham UnitedRotherham United 1-0 Torquay United | npower League Two |
| 8 | Tue 18 Sep 2012 | 21-0 v AFC WimbledonAFC Wimbledon 0-1 Torquay United | npower League Two |
| 9 | Sat 22 Sep 2012 | 21-1 v Burton AlbionTorquay United 1-1 Burton Albion | npower League Two |
| 10 | Sat 29 Sep 2012 | 21-1 v ChesterfieldChesterfield 1-1 Torquay United | npower League Two |
| 11 | Tue 2 Oct 2012 | 24-3 v Aldershot TownTorquay United 4-3 Aldershot Town | npower League Two |
| 12 | Sat 6 Oct 2012 | 21-2 v Wycombe WanderersWycombe Wanderers 2-1 Torquay United | npower League Two |
| 13 | Tue 16 Oct 2012 | 22-2 v Yeovil TownTorquay United 2-2 Yeovil Town | Johnstone's Paint Trophy Second Round |
| 14 | Sat 20 Oct 2012 | 22-3 v Bristol RoversBristol Rovers 3-2 Torquay United | npower League Two |
| 15 | Tue 6 Nov 2012 | 20-1 v BarnetBarnet 1-0 Torquay United | npower League Two |
| 16 | Sat 10 Nov 2012 | 20-0 v Oxford UnitedOxford United 0-0 Torquay United | npower League Two |
| 17 | Sat 17 Nov 2012 | 21-4 v Southend UnitedTorquay United 1-4 Southend United | npower League Two |
| 18 | Sat 24 Nov 2012 | 22-0 v York CityYork City 0-2 Torquay United | npower League Two |
| 19 | Sat 1 Dec 2012 | 22-1 v Dagenham & RedbridgeTorquay United 2-1 Dagenham & Redbridge | npower League Two |
| 20 | Sat 15 Dec 2012 | 21-1 v Northampton TownTorquay United 1-1 Northampton Town | npower League Two |
| 21 | Wed 26 Dec 2012 | 21-1 v Plymouth ArgylePlymouth Argyle 1-1 Torquay United | npower League Two |
| 22 | Tue 1 Jan 2013 | 22-3 v AFC WimbledonTorquay United 2-3 AFC Wimbledon | npower League Two |
| 23 | Sat 12 Jan 2013 | 21-2 v Burton AlbionBurton Albion 2-1 Torquay United | npower League Two |
| 24 | Tue 15 Jan 2013 | 21-1 v Exeter CityTorquay United 1-1 Exeter City | npower League Two |
| 25 | Mon 28 Jan 2013 | 21-0 v Exeter CityExeter City 0-1 Torquay United | npower League Two |
| 26 | Sat 2 Feb 2013 | 21-2 v Cheltenham TownCheltenham Town 2-1 Torquay United | npower League Two |
| 27 | Tue 26 Feb 2013 | 21-2 v Wycombe WanderersTorquay United 1-2 Wycombe Wanderers | npower League Two |
| 28 | Sat 2 Mar 2013 | 20-0 v Accrington StanleyAccrington Stanley 0-0 Torquay United | npower League Two |
| 29 | Sat 9 Mar 2013 | 21-3 v Oxford UnitedTorquay United 1-3 Oxford United | npower League Two |
| 30 | Tue 12 Mar 2013 | 22-2 v Dagenham & RedbridgeDagenham & Redbridge 2-2 Torquay United | npower League Two |
| 31 | Sat 16 Mar 2013 | 21-1 v Southend UnitedSouthend United 1-1 Torquay United | npower League Two |
| 32 | Tue 19 Mar 2013 | 22-1 v ChesterfieldTorquay United 2-1 Chesterfield | npower League Two |
| 33 | Sat 23 Mar 2013 | 22-1 v York CityTorquay United 2-1 York City | npower League Two |
| 34 | Fri 29 Mar 2013 | 20-1 v Northampton TownNorthampton Town 1-0 Torquay United | npower League Two |
| 35 | Mon 1 Apr 2013 | 21-3 v Bradford CityTorquay United 1-3 Bradford City | npower League Two |
| 36 | Sat 6 Apr 2013 | 20-1 v GillinghamGillingham 1-0 Torquay United | npower League Two |
| 37 | Tue 16 Apr 2013 | 23-2 v BarnetTorquay United 3-2 Barnet | npower League Two |
| 38 | Sat 20 Apr 2013 | 22-0 v MorecambeMorecambe 0-2 Torquay United | npower League Two |
| 39 | Sat 27 Apr 2013 | 23-3 v Bristol RoversTorquay United 3-3 Bristol Rovers | npower League Two |
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