| 1 | Tue 14 Aug 2012 | 40-4 v Leicester CityTorquay United 0-4 Leicester City | Capital One Cup First Round |
| 2 | Sat 18 Aug 2012 | 40-0 v Fleetwood TownFleetwood Town 0-0 Torquay United | npower League Two |
| 3 | Tue 21 Aug 2012 | 42-2 v Cheltenham TownTorquay United 2-2 Cheltenham Town | npower League Two |
| 4 | Sat 25 Aug 2012 | 44-2 v RochdaleTorquay United 4-2 Rochdale | npower League Two |
| 5 | Sat 8 Sep 2012 | 40-0 v Plymouth ArgyleTorquay United 0-0 Plymouth Argyle | npower League Two |
| 6 | Sat 15 Sep 2012 | 40-1 v Rotherham UnitedRotherham United 1-0 Torquay United | npower League Two |
| 7 | Tue 18 Sep 2012 | 41-0 v AFC WimbledonAFC Wimbledon 0-1 Torquay United | npower League Two |
| 8 | Sat 22 Sep 2012 | 41-1 v Burton AlbionTorquay United 1-1 Burton Albion | npower League Two |
| 9 | Sat 29 Sep 2012 | 41-1 v ChesterfieldChesterfield 1-1 Torquay United | npower League Two |
| 10 | Tue 2 Oct 2012 | 44-3 v Aldershot TownTorquay United 4-3 Aldershot Town | npower League Two |
| 11 | Sat 6 Oct 2012 | 41-2 v Wycombe WanderersWycombe Wanderers 2-1 Torquay United | npower League Two |
| 12 | Tue 16 Oct 2012 | 42-2 v Yeovil TownTorquay United 2-2 Yeovil Town | Johnstone's Paint Trophy Second Round |
| 13 | Sat 20 Oct 2012 | 42-3 v Bristol RoversBristol Rovers 3-2 Torquay United | npower League Two |
| 14 | Tue 23 Oct 2012 | 42-1 v GillinghamTorquay United 2-1 Gillingham | npower League Two |
| 15 | Sat 27 Oct 2012 | 41-0 v MorecambeTorquay United 1-0 Morecambe | npower League Two |
| 16 | Sat 3 Nov 2012 | 40-1 v Harrogate TownTorquay United 0-1 Harrogate Town | FA Cup with Budweiser First Round |
| 17 | Tue 6 Nov 2012 | 40-1 v BarnetBarnet 1-0 Torquay United | npower League Two |
| 18 | Sat 10 Nov 2012 | 40-0 v Oxford UnitedOxford United 0-0 Torquay United | npower League Two |
| 19 | Sat 17 Nov 2012 | 41-4 v Southend UnitedTorquay United 1-4 Southend United | npower League Two |
| 20 | Sat 24 Nov 2012 | 42-0 v York CityYork City 0-2 Torquay United | npower League Two |
| 21 | Sat 1 Dec 2012 | 42-1 v Dagenham & RedbridgeTorquay United 2-1 Dagenham & Redbridge | npower League Two |
| 22 | Sat 8 Dec 2012 | 40-1 v Bradford CityBradford City 1-0 Torquay United | npower League Two |
| 23 | Sat 15 Dec 2012 | 41-1 v Northampton TownTorquay United 1-1 Northampton Town | npower League Two |
| 24 | Wed 26 Dec 2012 | 41-1 v Plymouth ArgylePlymouth Argyle 1-1 Torquay United | npower League Two |
| 25 | Tue 1 Jan 2013 | 42-3 v AFC WimbledonTorquay United 2-3 AFC Wimbledon | npower League Two |
| 26 | Sat 12 Jan 2013 | 41-2 v Burton AlbionBurton Albion 2-1 Torquay United | npower League Two |
| 27 | Tue 15 Jan 2013 | 41-1 v Exeter CityTorquay United 1-1 Exeter City | npower League Two |
| 28 | Mon 28 Jan 2013 | 41-0 v Exeter CityExeter City 0-1 Torquay United | npower League Two |
| 29 | Sat 2 Feb 2013 | 41-2 v Cheltenham TownCheltenham Town 2-1 Torquay United | npower League Two |
| 30 | Sat 9 Feb 2013 | 40-1 v Fleetwood TownTorquay United 0-1 Fleetwood Town | npower League Two |
| 31 | Tue 12 Feb 2013 | 41-3 v Rotherham UnitedTorquay United 1-3 Rotherham United | npower League Two |
| 32 | Sat 16 Feb 2013 | 40-1 v RochdaleRochdale 1-0 Torquay United | npower League Two |
| 33 | Tue 19 Feb 2013 | 40-1 v Aldershot TownAldershot Town 1-0 Torquay United | npower League Two |
| 34 | Sat 23 Feb 2013 | 40-1 v Port ValeTorquay United 0-1 Port Vale | npower League Two |
| 35 | Sat 9 Mar 2013 | 41-3 v Oxford UnitedTorquay United 1-3 Oxford United | npower League Two |
| 36 | Tue 12 Mar 2013 | 42-2 v Dagenham & RedbridgeDagenham & Redbridge 2-2 Torquay United | npower League Two |
| 37 | Sat 6 Apr 2013 | 40-1 v GillinghamGillingham 1-0 Torquay United | npower League Two |
| 38 | Tue 16 Apr 2013 | 43-2 v BarnetTorquay United 3-2 Barnet | npower League Two |
| 39 | Sat 20 Apr 2013 | 42-0 v MorecambeMorecambe 0-2 Torquay United | npower League Two |
| 40 | Sat 27 Apr 2013 | 43-3 v Bristol RoversTorquay United 3-3 Bristol Rovers | npower League Two |
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