| 1 | Sat 12 Oct | 15 3-1 v Warrington RylandsWarrington Rylands 1-3 Stockton Town | Northern Premier League - Premier Division |
| 2 | Tue 15 Oct | 95-1 v Bamber BridgeBamber Bridge 1-5 Stockton Town | Northern Premier League - Premier Division |
| 3 | Sat 19 Oct | 93-0 v MickleoverStockton Town 3-0 Mickleover | Northern Premier League - Premier Division |
| 4 | Wed 23 Oct | 95-0 v Workington AFCStockton Town 5-0 Workington AFC | Northern Premier League - Premier Division |
| 5 | Sat 26 Oct | 92-1 v Newton AycliffeStockton Town 2-1 Newton Aycliffe | Isuzu FA Trophy First Round |
| 6 | Sat 2 Nov | 91-0 v Matlock TownStockton Town 1-0 Matlock Town | Northern Premier League - Premier Division |
| 7 | Sat 9 Nov | 91-2 v Ashton UnitedStockton Town 1-2 Ashton United | Northern Premier League - Premier Division |
| 8 | Tue 12 Nov | 91-2 v Basford UnitedBasford United 2-1 Stockton Town | Northern Premier League - Premier Division |
| 9 | Sat 23 Nov | 121-0 v FC United of ManchesterStockton Town 1-0 FC United of Manchester | Northern Premier League - Premier Division |
| 10 | Sat 30 Nov | 91-2 v Worksop TownWorksop Town 2-1 Stockton Town | Northern Premier League - Premier Division |
| 11 | Sat 7 Dec | 92-0 v Oldham AthleticStockton Town 2-0 Oldham Athletic | Isuzu FA Trophy Third Round |
| 12 | Wed 8 Jan | 160-0 v RochdaleStockton Town 0-0 Rochdale | Isuzu FA Trophy Fourth Round |
| 13 | Wed 15 Jan | 91-0 v Lancaster CityStockton Town 1-0 Lancaster City | Northern Premier League - Premier Division |
| 14 | Sat 18 Jan | 92-2 v Bamber BridgeStockton Town 2-2 Bamber Bridge | Northern Premier League - Premier Division |
| 15 | Sat 25 Jan | 92-3 v Gainsborough TrinityStockton Town 2-3 Gainsborough Trinity | Northern Premier League - Premier Division |
| 16 | Wed 29 Jan | 91-0 v Leek TownStockton Town 1-0 Leek Town | Northern Premier League - Premier Division |
| 17 | Sat 1 Feb | 93-1 v Workington AFCWorkington AFC 1-3 Stockton Town | Northern Premier League - Premier Division |
| 18 | Tue 4 Feb | 91-0 v Blyth SpartansBlyth Spartans 0-1 Stockton Town | Northern Premier League - Premier Division |
| 19 | Sat 8 Feb | 121-3 v Warrington RylandsStockton Town 1-3 Warrington Rylands | Northern Premier League - Premier Division |
| 20 | Sat 15 Feb | 90-1 v MickleoverMickleover 1-0 Stockton Town | Northern Premier League - Premier Division |
| 21 | Tue 18 Feb | 92-1 v Ilkeston TownIlkeston Town 1-2 Stockton Town | Northern Premier League - Premier Division |
| 22 | Sat 22 Feb | 9 3-2 v Matlock TownMatlock Town 2-3 Stockton Town | Northern Premier League - Premier Division |
| 23 | Sat 1 Mar | 91-1 v Basford UnitedStockton Town 1-1 Basford United | Northern Premier League - Premier Division |
| 24 | Sat 15 Mar | 91-0 v Ashton UnitedAshton United 0-1 Stockton Town | Northern Premier League - Premier Division |
| 25 | Sat 22 Mar | 9 1-0 v Ilkeston TownStockton Town 1-0 Ilkeston Town | Northern Premier League - Premier Division |
| 26 | Sat 29 Mar | 9 1-0 v FC United of ManchesterFC United of Manchester 0-1 Stockton Town | Northern Premier League - Premier Division |
| 27 | Sat 5 Apr | 9 3-0 v Worksop TownStockton Town 3-0 Worksop Town | Northern Premier League - Premier Division |
| 28 | Sat 12 Apr | 91-0 v Prescot CablesPrescot Cables 0-1 Stockton Town | Northern Premier League - Premier Division |
| 29 | Sat 19 Apr | 91-1 v Morpeth TownStockton Town 1-1 Morpeth Town | Northern Premier League - Premier Division |
| 30 | Mon 21 Apr | 90-2 v Hebburn TownHebburn Town 2-0 Stockton Town | Northern Premier League - Premier Division |
| 31 | Sat 26 Apr | 91-0 v Hyde UnitedStockton Town 1-0 Hyde United | Northern Premier League - Premier Division |
| 32 | Tue 29 Apr | 91-0 v GuiseleyStockton Town 1-0 Guiseley | Northern Premier League - Premier Division Play-off Semi Final |
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