| 1 | Sat 11 Aug 2012 | 31-0 v Alfreton TownStockport County 1-0 Alfreton Town | Blue Square Bet Premier |
| 2 | Tue 14 Aug 2012 | 32-1 v Grimsby TownGrimsby Town 1-2 Stockport County | Blue Square Bet Premier |
| 3 | Sat 18 Aug 2012 | 30-1 v TamworthTamworth 1-0 Stockport County | Blue Square Bet Premier |
| 4 | Fri 24 Aug 2012 | 31-2 v GatesheadStockport County 1-2 Gateshead | Blue Square Bet Premier |
| 5 | Mon 27 Aug 2012 | 32-2 v AFC Telford UnitedAFC Telford United 2-2 Stockport County | Blue Square Bet Premier |
| 6 | Sat 1 Sep 2012 | 31-1 v Cambridge UnitedStockport County 1-1 Cambridge United | Blue Square Bet Premier |
| 7 | Tue 4 Sep 2012 | 33-4 v Macclesfield TownStockport County 3-4 Macclesfield Town | Blue Square Bet Premier |
| 8 | Sat 8 Sep 2012 | 30-0 v Newport CountyNewport County 0-0 Stockport County | Blue Square Bet Premier |
| 9 | Sat 15 Sep 2012 | 31-2 v WokingStockport County 1-2 Woking | Blue Square Bet Premier |
| 10 | Sat 22 Sep 2012 | 30-0 v Braintree TownBraintree Town 0-0 Stockport County | Blue Square Bet Premier |
| 11 | Tue 25 Sep 2012 | 31-1 v SouthportSouthport 1-1 Stockport County | Blue Square Bet Premier |
| 12 | Sat 29 Sep 2012 | 33-1 v Ebbsfleet UnitedStockport County 3-1 Ebbsfleet United | Blue Square Bet Premier |
| 13 | Sat 6 Oct 2012 | 32-1 v Hereford UnitedHereford United 1-2 Stockport County | Blue Square Bet Premier |
| 14 | Sat 13 Oct 2012 | 31-0 v Kidderminster HarriersStockport County 1-0 Kidderminster Harriers | Blue Square Bet Premier |
| 15 | Sat 27 Oct 2012 | 33-3 v Lincoln CityLincoln City 3-3 Stockport County | Blue Square Bet Premier |
| 16 | Sat 3 Nov 2012 | 30-3 v Southend UnitedSouthend United 3-0 Stockport County | FA Cup with Budweiser First Round |
| 17 | Tue 6 Nov 2012 | 33-1 v BarrowStockport County 3-1 Barrow | Blue Square Bet Premier |
| 18 | Sat 10 Nov 2012 | 31-4 v Forest Green RoversForest Green Rovers 4-1 Stockport County | Blue Square Bet Premier |
| 19 | Sat 17 Nov 2012 | 30-2 v Nuneaton TownNuneaton Town 2-0 Stockport County | Blue Square Bet Premier |
| 20 | Sat 1 Dec 2012 | 33-4 v SouthportStockport County 3-4 Southport | Blue Square Bet Premier |
| 21 | Sat 8 Dec 2012 | 30-1 v WokingWoking 1-0 Stockport County | Blue Square Bet Premier |
| 22 | Sat 5 Jan 2013 | 31-4 v Cambridge UnitedCambridge United 4-1 Stockport County | Blue Square Bet Premier |
| 23 | Tue 15 Jan 2013 | 31-3 v Mansfield TownStockport County 1-3 Mansfield Town | Blue Square Bet Premier |
| 24 | Sat 19 Jan 2013 | 32-1 v Forest Green RoversStockport County 2-1 Forest Green Rovers | Blue Square Bet Premier |
| 25 | Sat 2 Feb 2013 | 33-2 v Nuneaton TownStockport County 3-2 Nuneaton Town | Blue Square Bet Premier |
| 26 | Sat 9 Feb 2013 | 31-3 v WrexhamWrexham 3-1 Stockport County | Blue Square Bet Premier |
| 27 | Tue 12 Feb 2013 | 32-0 v Lincoln CityStockport County 2-0 Lincoln City | Blue Square Bet Premier |
| 28 | Sat 16 Feb 2013 | 30-0 v Ebbsfleet UnitedEbbsfleet United 0-0 Stockport County | Blue Square Bet Premier |
| 29 | Tue 19 Feb 2013 | 30-1 v TamworthStockport County 0-1 Tamworth | Blue Square Bet Premier |
| 30 | Tue 26 Feb 2013 | 32-3 v Hereford UnitedStockport County 2-3 Hereford United | Blue Square Bet Premier |
| 31 | Sat 2 Mar 2013 | 30-1 v Luton TownStockport County 0-1 Luton Town | Blue Square Bet Premier |
| 32 | Tue 5 Mar 2013 | 31-1 v DartfordDartford 1-1 Stockport County | Blue Square Bet Premier |
| 33 | Sat 9 Mar 2013 | 31-4 v Mansfield TownMansfield Town 4-1 Stockport County | Blue Square Bet Premier |
| 34 | Tue 12 Mar 2013 | 32-0 v BarrowBarrow 0-2 Stockport County | Blue Square Bet Premier |
| 35 | Sat 16 Mar 2013 | 31-3 v Braintree TownStockport County 1-3 Braintree Town | Blue Square Bet Premier |
| 36 | Tue 19 Mar 2013 | 30-1 v Luton TownLuton Town 1-0 Stockport County | Blue Square Bet Premier |
| 37 | Sat 23 Mar 2013 | 31-0 v Newport CountyStockport County 1-0 Newport County | Blue Square Bet Premier |
| 38 | Sat 30 Mar 2013 | 31-1 v Macclesfield TownMacclesfield Town 1-1 Stockport County | Blue Square Bet Premier |
| 39 | Mon 1 Apr 2013 | 31-2 v Grimsby TownStockport County 1-2 Grimsby Town | Blue Square Bet Premier |
| 40 | Sat 6 Apr 2013 | 33-2 v Alfreton TownAlfreton Town 2-3 Stockport County | Blue Square Bet Premier |
| 41 | Sat 13 Apr 2013 | 30-1 v DartfordStockport County 0-1 Dartford | Blue Square Bet Premier |
| 42 | Tue 16 Apr 2013 | 31-1 v GatesheadGateshead 1-1 Stockport County | Blue Square Bet Premier |
| 43 | Sat 20 Apr 2013 | 30-4 v Kidderminster HarriersKidderminster Harriers 4-0 Stockport County | Blue Square Bet Premier |
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