| 1 | Tue 4 Sep 2012 | 12-3 v Dagenham & RedbridgeDagenham & Redbridge 3-2 Stevenage | Johnstone's Paint Trophy First Round |
| 2 | Tue 2 Oct 2012 | 12-1 v Notts CountyNotts County 1-2 Stevenage | npower League One |
| 3 | Sat 6 Oct 2012 | 11-0 v Scunthorpe UnitedStevenage 1-0 Scunthorpe United | npower League One |
| 4 | Sat 13 Oct 2012 | 10-1 v Colchester UnitedColchester United 1-0 Stevenage | npower League One |
| 5 | Sat 20 Oct 2012 | 11-0 v Milton Keynes DonsMilton Keynes Dons 0-1 Stevenage | npower League One |
| 6 | Tue 23 Oct 2012 | 12-1 v PortsmouthStevenage 2-1 Portsmouth | npower League One |
| 7 | Sat 27 Oct 2012 | 10-4 v Swindon TownStevenage 0-4 Swindon Town | npower League One |
| 8 | Sat 3 Nov 2012 | 12-3 v Rotherham UnitedRotherham United 3-2 Stevenage | FA Cup with Budweiser First Round |
| 9 | Tue 6 Nov 2012 | 13-1 v Yeovil TownYeovil Town 1-3 Stevenage | npower League One |
| 10 | Sat 10 Nov 2012 | 11-4 v Preston North EndStevenage 1-4 Preston North End | npower League One |
| 11 | Sat 17 Nov 2012 | 11-4 v Sheffield UnitedSheffield United 4-1 Stevenage | npower League One |
| 12 | Tue 20 Nov 2012 | 11-1 v BournemouthBournemouth 1-1 Stevenage | npower League One |
| 13 | Sat 24 Nov 2012 | 11-1 v Tranmere RoversStevenage 1-1 Tranmere Rovers | npower League One |
| 14 | Sat 8 Dec 2012 | 12-0 v Hartlepool UnitedHartlepool United 0-2 Stevenage | npower League One |
| 15 | Sat 15 Dec 2012 | 11-2 v Crawley TownStevenage 1-2 Crawley Town | npower League One |
| 16 | Wed 26 Dec 2012 | 11-3 v Coventry CityStevenage 1-3 Coventry City | npower League One |
| 17 | Tue 1 Jan 2013 | 10-1 v WalsallWalsall 1-0 Stevenage | npower League One |
| 18 | Sat 5 Jan 2013 | 12-1 v Crewe AlexandraCrewe Alexandra 1-2 Stevenage | npower League One |
| 19 | Sat 12 Jan 2013 | 11-2 v Doncaster RoversStevenage 1-2 Doncaster Rovers | npower League One |
| 20 | Sat 2 Feb 2013 | 10-1 v Leyton OrientStevenage 0-1 Leyton Orient | npower League One |
| 21 | Tue 5 Feb 2013 | 12-0 v Notts CountyStevenage 2-0 Notts County | npower League One |
| 22 | Sat 9 Feb 2013 | 11-2 v Carlisle UnitedCarlisle United 2-1 Stevenage | npower League One |
| 23 | Tue 5 Mar 2013 | 11-0 v BrentfordStevenage 1-0 Brentford | npower League One |
| 24 | Sat 9 Mar 2013 | 10-2 v Preston North EndPreston North End 2-0 Stevenage | npower League One |
| 25 | Tue 12 Mar 2013 | 10-1 v BournemouthStevenage 0-1 Bournemouth | npower League One |
| 26 | Sat 16 Mar 2013 | 14-0 v Sheffield UnitedStevenage 4-0 Sheffield United | npower League One |
| 27 | Tue 19 Mar 2013 | 10-2 v BuryBury 2-0 Stevenage | npower League One |
| 28 | Sun 24 Mar 2013 | 11-3 v Tranmere RoversTranmere Rovers 3-1 Stevenage | npower League One |
| 29 | Fri 29 Mar 2013 | 11-1 v Crawley TownCrawley Town 1-1 Stevenage | npower League One |
| 30 | Mon 1 Apr 2013 | 11-0 v Hartlepool UnitedStevenage 1-0 Hartlepool United | npower League One |
| 31 | Sat 6 Apr 2013 | 10-0 v PortsmouthPortsmouth 0-0 Stevenage | npower League One |
| 32 | Sat 13 Apr 2013 | 10-2 v Yeovil TownStevenage 0-2 Yeovil Town | npower League One |
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