| 1 | Sat 6 Aug 2016 | 180-3 v Dagenham & RedbridgeDagenham & Redbridge 3-0 Southport | National League |
| 2 | Tue 9 Aug 2016 | 180-3 v GatesheadSouthport 0-3 Gateshead | National League |
| 3 | Sat 13 Aug 2016 | 22-1 v WokingSouthport 2-1 Woking | National League |
| 4 | Tue 16 Aug 2016 | 21-3 v Macclesfield TownMacclesfield Town 3-1 Southport | National League |
| 5 | Sat 20 Aug 2016 | 20-4 v Lincoln CityLincoln City 4-0 Southport | National League |
| 6 | Mon 29 Aug 2016 | 21-5 v Forest Green RoversForest Green Rovers 5-1 Southport | National League |
| 7 | Sat 10 Sep 2016 | 21-1 v EastleighEastleigh 1-1 Southport | National League |
| 8 | Tue 13 Sep 2016 | 21-4 v BarrowSouthport 1-4 Barrow | National League |
| 9 | Sat 8 Oct 2016 | 21-2 v GuiseleyGuiseley 2-1 Southport | National League |
| 10 | Tue 29 Nov 2016 | 20-0 v Solihull MoorsSouthport 0-0 Solihull Moors | National League |
| 11 | Sat 7 Jan 2017 | 21-2 v Aldershot TownAldershot Town 2-1 Southport | National League |
| 12 | Sat 18 Feb 2017 | 20-0 v WokingWoking 0-0 Southport | National League |
| 13 | Sat 25 Feb 2017 | 20-1 v ChesterSouthport 0-1 Chester | National League |
| 14 | Sat 11 Mar 2017 | 21-2 v Torquay UnitedSouthport 1-2 Torquay United | National League |
| 15 | Sat 18 Mar 2017 | 20-2 v Braintree TownBraintree Town 2-0 Southport | National League |
| 16 | Tue 21 Mar 2017 | 23-5 v York CityYork City 5-3 Southport | National League |
| 17 | Sat 25 Mar 2017 | 21-0 v Boreham WoodSouthport 1-0 Boreham Wood | National League |
| 18 | Sat 1 Apr 2017 | 20-1 v GuiseleySouthport 0-1 Guiseley | National League |
| 19 | Tue 4 Apr 2017 | 21-2 v Macclesfield TownSouthport 1-2 Macclesfield Town | National League |
| 20 | Sat 8 Apr 2017 | 22-2 v Sutton UnitedSutton United 2-2 Southport | National League |
| 21 | Fri 14 Apr 2017 | 20-3 v Dover AthleticDover Athletic 3-0 Southport | National League |
| 22 | Mon 17 Apr 2017 | 22-0 v Forest Green RoversSouthport 2-0 Forest Green Rovers | National League |
| 23 | Sat 22 Apr 2017 | 21-4 v Tranmere RoversTranmere Rovers 4-1 Southport | National League |
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