| 1 | Sat 6 Aug 2016 | 90-3 v Dagenham & RedbridgeDagenham & Redbridge 3-0 Southport | National League |
| 2 | Tue 9 Aug 2016 | 90-3 v GatesheadSouthport 0-3 Gateshead | National League |
| 3 | Sat 13 Aug 2016 | 92-1 v WokingSouthport 2-1 Woking | National League |
| 4 | Tue 16 Aug 2016 | 91-3 v Macclesfield TownMacclesfield Town 3-1 Southport | National League |
| 5 | Sat 20 Aug 2016 | 90-4 v Lincoln CityLincoln City 4-0 Southport | National League |
| 6 | Mon 29 Aug 2016 | 91-5 v Forest Green RoversForest Green Rovers 5-1 Southport | National League |
| 7 | Sat 10 Sep 2016 | 91-1 v EastleighEastleigh 1-1 Southport | National League |
| 8 | Sat 17 Sep 2016 | 91-1 v Aldershot TownSouthport 1-1 Aldershot Town | National League |
| 9 | Sat 24 Sep 2016 | 91-0 v North Ferriby UnitedNorth Ferriby United 0-1 Southport | National League |
| 10 | Sat 1 Oct 2016 | 91-2 v BromleySouthport 1-2 Bromley | National League |
| 11 | Tue 4 Oct 2016 | 90-4 v Solihull MoorsSolihull Moors 4-0 Southport | National League |
| 12 | Tue 22 Nov 2016 | 62-2 v ChesterChester 2-2 Southport | National League |
| 13 | Sat 26 Nov 2016 | 94-5 v Braintree TownSouthport 4-5 Braintree Town | National League |
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