| 1 | Sat 6 Aug 2016 | 280-3 v Dagenham & RedbridgeDagenham & Redbridge 3-0 Southport | National League |
| 2 | Tue 9 Aug 2016 | 280-3 v GatesheadSouthport 0-3 Gateshead | National League |
| 3 | Sat 13 Aug 2016 | 162-1 v WokingSouthport 2-1 Woking | National League |
| 4 | Tue 16 Aug 2016 | 161-3 v Macclesfield TownMacclesfield Town 3-1 Southport | National League |
| 5 | Sat 20 Aug 2016 | 160-4 v Lincoln CityLincoln City 4-0 Southport | National League |
| 6 | Sat 27 Aug 2016 | 161-1 v Tranmere RoversSouthport 1-1 Tranmere Rovers | National League |
| 7 | Mon 29 Aug 2016 | 161-5 v Forest Green RoversForest Green Rovers 5-1 Southport | National League |
| 8 | Sat 3 Sep 2016 | 160-1 v Dover AthleticSouthport 0-1 Dover Athletic | National League |
| 9 | Sat 10 Sep 2016 | 161-1 v EastleighEastleigh 1-1 Southport | National League |
| 10 | Tue 13 Sep 2016 | 161-4 v BarrowSouthport 1-4 Barrow | National League |
| 11 | Sat 17 Sep 2016 | 161-1 v Aldershot TownSouthport 1-1 Aldershot Town | National League |
| 12 | Sat 24 Sep 2016 | 161-0 v North Ferriby UnitedNorth Ferriby United 0-1 Southport | National League |
| 13 | Sat 1 Oct 2016 | 161-2 v BromleySouthport 1-2 Bromley | National League |
| 14 | Tue 4 Oct 2016 | 160-4 v Solihull MoorsSolihull Moors 4-0 Southport | National League |
| 15 | Sat 22 Oct 2016 | 161-1 v Sutton UnitedSouthport 1-1 Sutton United | National League |
| 16 | Tue 25 Oct 2016 | 162-0 v York CitySouthport 2-0 York City | National League |
| 17 | Sat 29 Oct 2016 | 162-1 v Torquay UnitedTorquay United 1-2 Southport | National League |
| 18 | Mon 7 Nov 2016 | 160-0 v Fleetwood TownSouthport 0-0 Fleetwood Town | Emirates FA Cup First Round |
| 19 | Sat 12 Nov 2016 | 163-2 v Maidstone UnitedSouthport 3-2 Maidstone United | National League |
| 20 | Tue 22 Nov 2016 | 162-2 v ChesterChester 2-2 Southport | National League |
| 21 | Sat 26 Nov 2016 | 164-5 v Braintree TownSouthport 4-5 Braintree Town | National League |
| 22 | Tue 29 Nov 2016 | 160-0 v Solihull MoorsSouthport 0-0 Solihull Moors | National League |
| 23 | Mon 26 Dec 2016 | 160-1 v WrexhamWrexham 1-0 Southport | National League |
| 24 | Sun 1 Jan 2017 | 163-2 v WrexhamSouthport 3-2 Wrexham | National League |
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