| 1 | Sat 27 Aug 2016 | 261-1 v Tranmere RoversSouthport 1-1 Tranmere Rovers | National League |
| 2 | Mon 29 Aug 2016 | 261-5 v Forest Green RoversForest Green Rovers 5-1 Southport | National League |
| 3 | Sat 3 Sep 2016 | 0-1 v Dover AthleticSouthport 0-1 Dover Athletic | National League |
| 4 | Sat 10 Sep 2016 | 1-1 v EastleighEastleigh 1-1 Southport | National League |
| 5 | Tue 13 Sep 2016 | 221-4 v BarrowSouthport 1-4 Barrow | National League |
| 6 | Sat 17 Sep 2016 | 1-1 v Aldershot TownSouthport 1-1 Aldershot Town | National League |
| 7 | Sat 24 Sep 2016 | 1-0 v North Ferriby UnitedNorth Ferriby United 0-1 Southport | National League |
| 8 | Sat 1 Oct 2016 | 1-2 v BromleySouthport 1-2 Bromley | National League |
| 9 | Tue 4 Oct 2016 | 0-4 v Solihull MoorsSolihull Moors 4-0 Southport | National League |
| 10 | Sat 8 Oct 2016 | 1-2 v GuiseleyGuiseley 2-1 Southport | National League |
| 11 | Sat 22 Oct 2016 | 221-1 v Sutton UnitedSouthport 1-1 Sutton United | National League |
| 12 | Tue 25 Oct 2016 | 222-0 v York CitySouthport 2-0 York City | National League |
| 13 | Sat 29 Oct 2016 | 222-1 v Torquay UnitedTorquay United 1-2 Southport | National League |
| 14 | Mon 7 Nov 2016 | 220-0 v Fleetwood TownSouthport 0-0 Fleetwood Town | Emirates FA Cup First Round |
| 15 | Sat 12 Nov 2016 | 223-2 v Maidstone UnitedSouthport 3-2 Maidstone United | National League |
| 16 | Tue 15 Nov 2016 | 221-4 v Fleetwood TownFleetwood Town 4-1 Southport | Emirates FA Cup First Round |
| 17 | Sat 19 Nov 2016 | 220-2 v Boreham WoodBoreham Wood 2-0 Southport | National League |
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