| 1 | Sat 6 Aug 2016 | 180-3 v Dagenham & RedbridgeDagenham & Redbridge 3-0 Southport | National League |
| 2 | Tue 9 Aug 2016 | 180-3 v GatesheadSouthport 0-3 Gateshead | National League |
| 3 | Sat 13 Aug 2016 | 82-1 v WokingSouthport 2-1 Woking | National League |
| 4 | Tue 16 Aug 2016 | 81-3 v Macclesfield TownMacclesfield Town 3-1 Southport | National League |
| 5 | Sat 20 Aug 2016 | 80-4 v Lincoln CityLincoln City 4-0 Southport | National League |
| 6 | Tue 13 Sep 2016 | 81-4 v BarrowSouthport 1-4 Barrow | National League |
| 7 | Sat 17 Sep 2016 | 81-1 v Aldershot TownSouthport 1-1 Aldershot Town | National League |
| 8 | Sat 22 Oct 2016 | 81-1 v Sutton UnitedSouthport 1-1 Sutton United | National League |
| 9 | Sat 29 Oct 2016 | 82-1 v Torquay UnitedTorquay United 1-2 Southport | National League |
| 10 | Sat 12 Nov 2016 | 83-2 v Maidstone UnitedSouthport 3-2 Maidstone United | National League |
| 11 | Tue 22 Nov 2016 | 82-2 v ChesterChester 2-2 Southport | National League |
| 12 | Sat 26 Nov 2016 | 84-5 v Braintree TownSouthport 4-5 Braintree Town | National League |
| 13 | Sat 4 Feb 2017 | 80-3 v GatesheadGateshead 3-0 Southport | National League |
| 14 | Sat 25 Feb 2017 | 80-1 v ChesterSouthport 0-1 Chester | National League |
| 15 | Sat 4 Mar 2017 | 82-4 v Maidstone UnitedMaidstone United 4-2 Southport | National League |
| 16 | Sat 11 Mar 2017 | 81-2 v Torquay UnitedSouthport 1-2 Torquay United | National League |
| 17 | Sat 18 Mar 2017 | 80-2 v Braintree TownBraintree Town 2-0 Southport | National League |
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