| 1 | Sat 1 Dec 2012 | 94-3 v Stockport CountyStockport County 3-4 Southport | Blue Square Bet Premier |
| 2 | Sat 8 Dec 2012 | 90-2 v Braintree TownSouthport 0-2 Braintree Town | Blue Square Bet Premier |
| 3 | Tue 1 Jan 2013 | 92-2 v Macclesfield TownMacclesfield Town 2-2 Southport | Blue Square Bet Premier |
| 4 | Sat 5 Jan 2013 | 93-1 v AFC Telford UnitedAFC Telford United 1-3 Southport | Blue Square Bet Premier |
| 5 | Tue 8 Jan 2013 | 94-2 v Lincoln CitySouthport 4-2 Lincoln City | Blue Square Bet Premier |
| 6 | Tue 29 Jan 2013 | 92-2 v WrexhamWrexham 2-2 Southport | Blue Square Bet Premier |
| 7 | Sat 2 Feb 2013 | 92-2 v Hereford UnitedHereford United 2-2 Southport | Blue Square Bet Premier |
| 8 | Sat 9 Feb 2013 | 91-0 v Nuneaton TownNuneaton Town 0-1 Southport | Blue Square Bet Premier |
| 9 | Tue 12 Feb 2013 | 95-2 v BarrowSouthport 5-2 Barrow | Blue Square Bet Premier |
| 10 | Sat 23 Feb 2013 | 91-2 v WokingSouthport 1-2 Woking | Blue Square Bet Premier |
| 11 | Sat 2 Mar 2013 | 92-2 v DartfordSouthport 2-2 Dartford | Blue Square Bet Premier |
| 12 | Tue 5 Mar 2013 | 92-1 v Cambridge UnitedSouthport 2-1 Cambridge United | Blue Square Bet Premier |
| 13 | Sat 9 Mar 2013 | 90-1 v Lincoln CityLincoln City 1-0 Southport | Blue Square Bet Premier |
| 14 | Tue 19 Mar 2013 | 91-2 v TamworthTamworth 2-1 Southport | Blue Square Bet Premier |
| 15 | Sat 23 Mar 2013 | 91-3 v Kidderminster HarriersSouthport 1-3 Kidderminster Harriers | Blue Square Bet Premier |
| 16 | Tue 26 Mar 2013 | 90-2 v Newport CountySouthport 0-2 Newport County | Blue Square Bet Premier |
| 17 | Sat 30 Mar 2013 | 92-2 v GatesheadGateshead 2-2 Southport | Blue Square Bet Premier |
| 18 | Mon 1 Apr 2013 | 90-2 v Alfreton TownSouthport 0-2 Alfreton Town | Blue Square Bet Premier |
| 19 | Wed 3 Apr 2013 | 93-1 v Braintree TownBraintree Town 1-3 Southport | Blue Square Bet Premier |
| 20 | Sat 6 Apr 2013 | 92-2 v Grimsby TownGrimsby Town 2-2 Southport | Blue Square Bet Premier |
| 21 | Sat 13 Apr 2013 | 91-0 v Forest Green RoversForest Green Rovers 0-1 Southport | Blue Square Bet Premier |
| 22 | Sat 20 Apr 2013 | 91-3 v Luton TownSouthport 1-3 Luton Town | Blue Square Bet Premier |
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