| 1 | Sat 16 Feb 2013 | 121-2 v Northampton TownSouthend United 1-2 Northampton Town | npower League Two |
| 2 | Wed 20 Feb 2013 | 122-2 v Leyton OrientSouthend United 2-2 Leyton Orient | Johnstone's Paint Trophy Southern Area Final |
| 3 | Sat 23 Feb 2013 | 122-1 v Wycombe WanderersWycombe Wanderers 1-2 Southend United | npower League Two |
| 4 | Tue 26 Feb 2013 | 120-2 v BarnetBarnet 2-0 Southend United | npower League Two |
| 5 | Sat 2 Mar 2013 | 121-1 v Rotherham UnitedSouthend United 1-1 Rotherham United | npower League Two |
| 6 | Sat 9 Mar 2013 | 122-1 v Port ValePort Vale 1-2 Southend United | npower League Two |
| 7 | Tue 12 Mar 2013 | 121-3 v AFC WimbledonSouthend United 1-3 AFC Wimbledon | npower League Two |
| 8 | Sat 16 Mar 2013 | 121-1 v Torquay UnitedSouthend United 1-1 Torquay United | npower League Two |
| 9 | Fri 29 Mar 2013 | 122-2 v Bradford CityBradford City 2-2 Southend United | npower League Two |
| 10 | Sat 13 Apr 2013 | 120-0 v Bristol RoversSouthend United 0-0 Bristol Rovers | npower League Two |
| 11 | Tue 16 Apr 2013 | 122-0 v Aldershot TownAldershot Town 0-2 Southend United | npower League Two |
| 12 | Sat 20 Apr 2013 | 121-2 v York CityYork City 2-1 Southend United | npower League Two |
| 13 | Sat 27 Apr 2013 | 120-1 v MorecambeSouthend United 0-1 Morecambe | npower League Two |
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