| 1 | Sat 29 Sep 2012 | 2-3 v Staines TownStaines Town 3-2 Salisbury City | Blue Square Bet South |
| 2 | Tue 2 Oct 2012 | 4-0 v Dorchester TownSalisbury City 4-0 Dorchester Town | Blue Square Bet South |
| 3 | Sat 20 Oct 2012 | 3-1 v Dover AthleticDover Athletic 1-3 Salisbury City | Blue Square Bet South |
| 4 | Tue 30 Oct 2012 | 2-0 v Hayes & Yeading UnitedSalisbury City 2-0 Hayes & Yeading United | Blue Square Bet South |
| 5 | Sat 3 Nov 2012 | 1-1 v Maidenhead UnitedSalisbury City 1-1 Maidenhead United | Blue Square Bet South |
| 6 | Sat 15 Dec 2012 | 2-1 v Eastbourne BoroughEastbourne Borough 1-2 Salisbury City | Blue Square Bet South |
| 7 | Tue 1 Jan 2013 | 5-3 v EastleighSalisbury City 5-3 Eastleigh | Blue Square Bet South |
| 8 | Sat 12 Jan 2013 | 2-2 v AFC HornchurchAFC Hornchurch 2-2 Salisbury City | Blue Square Bet South |
| 9 | Tue 15 Jan 2013 | 4-3 v Truro CitySalisbury City 4-3 Truro City | Blue Square Bet South |
| 10 | Sat 19 Jan 2013 | 3-1 v Staines TownSalisbury City 3-1 Staines Town | Blue Square Bet South |
| 11 | Tue 29 Jan 2013 | 1-2 v FarnboroughFarnborough 2-1 Salisbury City | Blue Square Bet South |
| 12 | Sat 16 Feb 2013 | 2-0 v Billericay TownSalisbury City 2-0 Billericay Town | Blue Square Bet South |
| 13 | Tue 5 Mar 2013 | 0-2 v Basingstoke TownSalisbury City 0-2 Basingstoke Town | Blue Square Bet South |
| 14 | Sat 9 Mar 2013 | 3-0 v Weston-super-MareWeston-super-Mare 0-3 Salisbury City | Blue Square Bet South |
| 15 | Sat 30 Mar 2013 | 2-0 v Tonbridge AngelsSalisbury City 2-0 Tonbridge Angels | Blue Square Bet South |
| 16 | Sat 6 Apr 2013 | 2-1 v Welling UnitedSalisbury City 2-1 Welling United | Blue Square Bet South |
| 17 | Tue 9 Apr 2013 | 1-1 v Dover AthleticSalisbury City 1-1 Dover Athletic | Blue Square Bet South |
| 18 | Sat 13 Apr 2013 | 2-1 v Billericay TownBillericay Town 1-2 Salisbury City | Blue Square Bet South |
| 19 | Sat 20 Apr 2013 | 5-1 v Havant & WaterloovilleSalisbury City 5-1 Havant & Waterlooville | Blue Square Bet South |
| 20 | Tue 30 Apr 2013 | 0-1 v Chelmsford CityChelmsford City 1-0 Salisbury City | Blue Square Bet South Play-off Semi Final |
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