| 1 | Sat 18 Aug 2012 | 2-1 v AFC HornchurchSalisbury City 2-1 AFC Hornchurch | Blue Square Bet South |
| 2 | Tue 21 Aug 2012 | 2-1 v Tonbridge AngelsTonbridge Angels 1-2 Salisbury City | Blue Square Bet South |
| 3 | Sat 25 Aug 2012 | 1-1 v Truro CityTruro City 1-1 Salisbury City | Blue Square Bet South |
| 4 | Mon 27 Aug 2012 | 1-0 v FarnboroughSalisbury City 1-0 Farnborough | Blue Square Bet South |
| 5 | Sat 1 Sep 2012 | 1-2 v Chelmsford CityChelmsford City 2-1 Salisbury City | Blue Square Bet South |
| 6 | Tue 4 Sep 2012 | 3-2 v Bath CitySalisbury City 3-2 Bath City | Blue Square Bet South |
| 7 | Sat 8 Sep 2012 | 1-0 v Eastbourne BoroughSalisbury City 1-0 Eastbourne Borough | Blue Square Bet South |
| 8 | Sat 29 Sep 2012 | 2-3 v Staines TownStaines Town 3-2 Salisbury City | Blue Square Bet South |
| 9 | Sat 20 Oct 2012 | 3-1 v Dover AthleticDover Athletic 1-3 Salisbury City | Blue Square Bet South |
| 10 | Sat 27 Oct 2012 | 2-1 v BromleyBromley 1-2 Salisbury City | Blue Square Bet South |
| 11 | Tue 30 Oct 2012 | 2-0 v Hayes & Yeading UnitedSalisbury City 2-0 Hayes & Yeading United | Blue Square Bet South |
| 12 | Sat 1 Dec 2012 | 1-0 v Maidenhead UnitedMaidenhead United 0-1 Salisbury City | Blue Square Bet South |
| 13 | Sat 8 Dec 2012 | 3-2 v Chelmsford CitySalisbury City 3-2 Chelmsford City | Blue Square Bet South |
| 14 | Sat 15 Dec 2012 | 2-1 v Eastbourne BoroughEastbourne Borough 1-2 Salisbury City | Blue Square Bet South |
| 15 | Tue 1 Jan 2013 | 5-3 v EastleighSalisbury City 5-3 Eastleigh | Blue Square Bet South |
| 16 | Sat 5 Jan 2013 | 1-0 v Sutton UnitedSalisbury City 1-0 Sutton United | Blue Square Bet South |
| 17 | Sat 12 Jan 2013 | 2-2 v AFC HornchurchAFC Hornchurch 2-2 Salisbury City | Blue Square Bet South |
| 18 | Tue 15 Jan 2013 | 4-3 v Truro CitySalisbury City 4-3 Truro City | Blue Square Bet South |
| 19 | Sat 19 Jan 2013 | 3-1 v Staines TownSalisbury City 3-1 Staines Town | Blue Square Bet South |
| 20 | Tue 29 Jan 2013 | 1-2 v FarnboroughFarnborough 2-1 Salisbury City | Blue Square Bet South |
| 21 | Sat 2 Feb 2013 | 3-1 v BromleySalisbury City 3-1 Bromley | Blue Square Bet South |
| 22 | Sat 9 Feb 2013 | 1-2 v Dorchester TownDorchester Town 2-1 Salisbury City | Blue Square Bet South |
| 23 | Sat 16 Feb 2013 | 2-0 v Billericay TownSalisbury City 2-0 Billericay Town | Blue Square Bet South |
| 24 | Wed 20 Feb 2013 | 0-1 v Boreham WoodBoreham Wood 1-0 Salisbury City | Blue Square Bet South |
| 25 | Sat 23 Feb 2013 | 2-2 v Havant & WaterloovilleHavant & Waterlooville 2-2 Salisbury City | Blue Square Bet South |
| 26 | Sat 2 Mar 2013 | 1-1 v Weston-super-MareSalisbury City 1-1 Weston-super-Mare | Blue Square Bet South |
| 27 | Tue 5 Mar 2013 | 0-2 v Basingstoke TownSalisbury City 0-2 Basingstoke Town | Blue Square Bet South |
| 28 | Sat 9 Mar 2013 | 3-0 v Weston-super-MareWeston-super-Mare 0-3 Salisbury City | Blue Square Bet South |
| 29 | Sat 30 Mar 2013 | 2-0 v Tonbridge AngelsSalisbury City 2-0 Tonbridge Angels | Blue Square Bet South |
| 30 | Mon 1 Apr 2013 | 0-0 v Bath CityBath City 0-0 Salisbury City | Blue Square Bet South |
| 31 | Sat 6 Apr 2013 | 2-1 v Welling UnitedSalisbury City 2-1 Welling United | Blue Square Bet South |
| 32 | Tue 9 Apr 2013 | 1-1 v Dover AthleticSalisbury City 1-1 Dover Athletic | Blue Square Bet South |
| 33 | Sat 13 Apr 2013 | 2-1 v Billericay TownBillericay Town 1-2 Salisbury City | Blue Square Bet South |
| 34 | Sat 20 Apr 2013 | 5-1 v Havant & WaterloovilleSalisbury City 5-1 Havant & Waterlooville | Blue Square Bet South |
| 35 | Tue 30 Apr 2013 | 0-1 v Chelmsford CityChelmsford City 1-0 Salisbury City | Blue Square Bet South Play-off Semi Final |
| 36 | Sat 4 May 2013 | 2-0 v Chelmsford CitySalisbury City 2-0 Chelmsford City | Blue Square Bet South Play-off Semi Final |
| 37 | Sun 12 May 2013 | 3-2 v Dover AthleticSalisbury City 3-2 Dover Athletic | Blue Square Bet South Play-off Final |
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