| 1 | Sat 6 Aug 2016 | 41-1 v Carlisle UnitedPortsmouth 1-1 Carlisle United | Sky Bet League Two |
| 2 | Sat 13 Aug 2016 | 40-0 v Crewe AlexandraCrewe Alexandra 0-0 Portsmouth | Sky Bet League Two |
| 3 | Tue 16 Aug 2016 | 40-2 v MorecambeMorecambe 2-0 Portsmouth | Sky Bet League Two |
| 4 | Sat 20 Aug 2016 | 42-0 v Colchester UnitedPortsmouth 2-0 Colchester United | Sky Bet League Two |
| 5 | Sat 27 Aug 2016 | 41-0 v Exeter CityExeter City 0-1 Portsmouth | Sky Bet League Two |
| 6 | Sat 3 Sep 2016 | 43-0 v Crawley TownPortsmouth 3-0 Crawley Town | Sky Bet League Two |
| 7 | Sat 10 Sep 2016 | 44-2 v Wycombe WanderersPortsmouth 4-2 Wycombe Wanderers | Sky Bet League Two |
| 8 | Sat 17 Sep 2016 | 40-1 v Accrington StanleyAccrington Stanley 1-0 Portsmouth | Sky Bet League Two |
| 9 | Sat 24 Sep 2016 | 45-1 v BarnetPortsmouth 5-1 Barnet | Sky Bet League Two |
| 10 | Tue 27 Sep 2016 | 41-3 v BlackpoolBlackpool 3-1 Portsmouth | Sky Bet League Two |
| 11 | Sat 1 Oct 2016 | 41-2 v Doncaster RoversPortsmouth 1-2 Doncaster Rovers | Sky Bet League Two |
| 12 | Sat 8 Oct 2016 | 41-0 v Leyton OrientLeyton Orient 0-1 Portsmouth | Sky Bet League Two |
| 13 | Sat 15 Oct 2016 | 42-2 v Plymouth ArgylePlymouth Argyle 2-2 Portsmouth | Sky Bet League Two |
| 14 | Sat 29 Oct 2016 | 41-0 v Cambridge UnitedCambridge United 0-1 Portsmouth | Sky Bet League Two |
| 15 | Sat 5 Nov 2016 | 41-2 v Wycombe WanderersPortsmouth 1-2 Wycombe Wanderers | Emirates FA Cup First Round |
| 16 | Sat 12 Nov 2016 | 44-0 v Mansfield TownPortsmouth 4-0 Mansfield Town | Sky Bet League Two |
| 17 | Sat 19 Nov 2016 | 41-1 v Cheltenham TownCheltenham Town 1-1 Portsmouth | Sky Bet League Two |
| 18 | Tue 22 Nov 2016 | 43-1 v Luton TownLuton Town 1-3 Portsmouth | Sky Bet League Two |
| 19 | Sat 26 Nov 2016 | 41-2 v StevenagePortsmouth 1-2 Stevenage | Sky Bet League Two |
| 20 | Sat 10 Dec 2016 | 41-0 v Grimsby TownGrimsby Town 0-1 Portsmouth | Sky Bet League Two |
| 21 | Sat 17 Dec 2016 | 40-0 v Hartlepool UnitedPortsmouth 0-0 Hartlepool United | Sky Bet League Two |
| 22 | Mon 26 Dec 2016 | 43-2 v Newport CountyNewport County 2-3 Portsmouth | Sky Bet League Two |
| 23 | Fri 30 Dec 2016 | 40-0 v Yeovil TownYeovil Town 0-0 Portsmouth | Sky Bet League Two |
| 24 | Mon 2 Jan 2017 | 41-0 v Luton TownPortsmouth 1-0 Luton Town | Sky Bet League Two |
| 25 | Thu 5 Jan 2017 | 41-3 v Doncaster RoversDoncaster Rovers 3-1 Portsmouth | Sky Bet League Two |
| 26 | Sat 14 Jan 2017 | 42-1 v Leyton OrientPortsmouth 2-1 Leyton Orient | Sky Bet League Two |
| 27 | Sat 28 Jan 2017 | 40-1 v Exeter CityPortsmouth 0-1 Exeter City | Sky Bet League Two |
| 28 | Tue 28 Feb 2017 | 41-1 v MorecambePortsmouth 1-1 Morecambe | Sky Bet League Two |
| 29 | Tue 7 Mar 2017 | 42-0 v Crawley TownCrawley Town 0-2 Portsmouth | Sky Bet League Two |
| 30 | Sat 11 Mar 2017 | 44-0 v Colchester UnitedColchester United 0-4 Portsmouth | Sky Bet League Two |
| 31 | Tue 14 Mar 2017 | 44-0 v Grimsby TownPortsmouth 4-0 Grimsby Town | Sky Bet League Two |
| 32 | Sat 18 Mar 2017 | 40-3 v StevenageStevenage 3-0 Portsmouth | Sky Bet League Two |
| 33 | Sat 25 Mar 2017 | 42-1 v Newport CountyPortsmouth 2-1 Newport County | Sky Bet League Two |
| 34 | Sat 1 Apr 2017 | 42-0 v Hartlepool UnitedHartlepool United 0-2 Portsmouth | Sky Bet League Two |
| 35 | Sat 8 Apr 2017 | 43-1 v Yeovil TownPortsmouth 3-1 Yeovil Town | Sky Bet League Two |
| 36 | Fri 14 Apr 2017 | 41-1 v Plymouth ArgylePortsmouth 1-1 Plymouth Argyle | Sky Bet League Two |
| 37 | Sat 29 Apr 2017 | 41-0 v Mansfield TownMansfield Town 0-1 Portsmouth | Sky Bet League Two |
| 38 | Sat 6 May 2017 | 46-1 v Cheltenham TownPortsmouth 6-1 Cheltenham Town | Sky Bet League Two |
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