| 1 | Sun 4 Sep 2016 | 43-2 v Milton Keynes DonsNorthampton Town 3-2 Milton Keynes Dons | Sky Bet League One |
| 2 | Sat 10 Sep 2016 | 42-0 v WalsallNorthampton Town 2-0 Walsall | Sky Bet League One |
| 3 | Sat 17 Sep 2016 | 41-3 v ChesterfieldChesterfield 3-1 Northampton Town | Sky Bet League One |
| 4 | Sat 24 Sep 2016 | 44-0 v Southend UnitedNorthampton Town 4-0 Southend United | Sky Bet League One |
| 5 | Tue 27 Sep 2016 | 43-1 v Swindon TownSwindon Town 1-3 Northampton Town | Sky Bet League One |
| 6 | Sat 1 Oct 2016 | 42-3 v Bristol RoversNorthampton Town 2-3 Bristol Rovers | Sky Bet League One |
| 7 | Sat 8 Oct 2016 | 41-1 v Scunthorpe UnitedScunthorpe United 1-1 Northampton Town | Sky Bet League One |
| 8 | Sat 15 Oct 2016 | 41-3 v MillwallNorthampton Town 1-3 Millwall | Sky Bet League One |
| 9 | Tue 18 Oct 2016 | 40-3 v Peterborough UnitedPeterborough United 3-0 Northampton Town | Sky Bet League One |
| 10 | Sat 22 Oct 2016 | 44-2 v Shrewsbury TownShrewsbury Town 2-4 Northampton Town | Sky Bet League One |
| 11 | Sat 29 Oct 2016 | 43-2 v BuryNorthampton Town 3-2 Bury | Sky Bet League One |
| 12 | Sat 5 Nov 2016 | 46-0 v Harrow BoroughNorthampton Town 6-0 Harrow Borough | Emirates FA Cup First Round |
| 13 | Sat 12 Nov 2016 | 41-2 v GillinghamGillingham 2-1 Northampton Town | Sky Bet League One |
| 14 | Sat 19 Nov 2016 | 40-1 v Peterborough UnitedNorthampton Town 0-1 Peterborough United | Sky Bet League One |
| 15 | Tue 22 Nov 2016 | 40-1 v Bradford CityBradford City 1-0 Northampton Town | Sky Bet League One |
| 16 | Sat 26 Nov 2016 | 40-1 v Bolton WanderersNorthampton Town 0-1 Bolton Wanderers | Sky Bet League One |
| 17 | Sat 10 Dec 2016 | 43-2 v Port ValePort Vale 2-3 Northampton Town | Sky Bet League One |
| 18 | Tue 13 Dec 2016 | 40-1 v StourbridgeStourbridge 1-0 Northampton Town | Emirates FA Cup Second Round |
| 19 | Sat 17 Dec 2016 | 42-3 v RochdaleNorthampton Town 2-3 Rochdale | Sky Bet League One |
| 20 | Mon 26 Dec 2016 | 41-0 v Oxford UnitedOxford United 0-1 Northampton Town | Sky Bet League One |
| 21 | Sat 31 Dec 2016 | 40-1 v Sheffield UnitedSheffield United 1-0 Northampton Town | Sky Bet League One |
| 22 | Mon 2 Jan 2017 | 41-2 v Bradford CityNorthampton Town 1-2 Bradford City | Sky Bet League One |
| 23 | Sat 7 Jan 2017 | 40-5 v Bristol RoversBristol Rovers 5-0 Northampton Town | Sky Bet League One |
| 24 | Sat 28 Jan 2017 | 43-0 v Coventry CityNorthampton Town 3-0 Coventry City | Sky Bet League One |
| 25 | Sat 11 Feb 2017 | 43-1 v ChesterfieldNorthampton Town 3-1 Chesterfield | Sky Bet League One |
| 26 | Sat 18 Feb 2017 | 42-2 v Southend UnitedSouthend United 2-2 Northampton Town | Sky Bet League One |
| 27 | Sat 25 Feb 2017 | 40-3 v Fleetwood TownFleetwood Town 3-0 Northampton Town | Sky Bet League One |
| 28 | Sat 4 Mar 2017 | 42-1 v Charlton AthleticNorthampton Town 2-1 Charlton Athletic | Sky Bet League One |
| 29 | Sat 11 Mar 2017 | 41-0 v AFC WimbledonAFC Wimbledon 0-1 Northampton Town | Sky Bet League One |
| 30 | Tue 14 Mar 2017 | 42-1 v Port ValeNorthampton Town 2-1 Port Vale | Sky Bet League One |
| 31 | Sat 18 Mar 2017 | 41-2 v Bolton WanderersBolton Wanderers 2-1 Northampton Town | Sky Bet League One |
| 32 | Sat 25 Mar 2017 | 40-0 v Oxford UnitedNorthampton Town 0-0 Oxford United | Sky Bet League One |
| 33 | Sat 1 Apr 2017 | 41-1 v RochdaleRochdale 1-1 Northampton Town | Sky Bet League One |
| 34 | Sat 8 Apr 2017 | 41-2 v Sheffield UnitedNorthampton Town 1-2 Sheffield United | Sky Bet League One |
| 35 | Fri 14 Apr 2017 | 40-3 v MillwallMillwall 3-0 Northampton Town | Sky Bet League One |
| 36 | Mon 17 Apr 2017 | 41-1 v Shrewsbury TownNorthampton Town 1-1 Shrewsbury Town | Sky Bet League One |
| 37 | Sat 22 Apr 2017 | 40-3 v BuryBury 3-0 Northampton Town | Sky Bet League One |
| 38 | Sun 30 Apr 2017 | 40-0 v GillinghamNorthampton Town 0-0 Gillingham | Sky Bet League One |
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