| 1 | Sat 3 Aug 2013 | 40-1 v York CityYork City 1-0 Northampton Town | Sky Bet League Two |
| 2 | Sat 10 Aug 2013 | 43-1 v Newport CountyNorthampton Town 3-1 Newport County | Sky Bet League Two |
| 3 | Sat 17 Aug 2013 | 40-2 v Southend UnitedSouthend United 2-0 Northampton Town | Sky Bet League Two |
| 4 | Sat 24 Aug 2013 | 41-2 v Torquay UnitedNorthampton Town 1-2 Torquay United | Sky Bet League Two |
| 5 | Sat 31 Aug 2013 | 40-1 v Bristol RoversBristol Rovers 1-0 Northampton Town | Sky Bet League Two |
| 6 | Tue 3 Sep 2013 | 40-2 v Milton Keynes DonsMilton Keynes Dons 2-0 Northampton Town | Johnstone's Paint Trophy Southern Area First Round |
| 7 | Sat 7 Sep 2013 | 41-1 v Scunthorpe UnitedNorthampton Town 1-1 Scunthorpe United | Sky Bet League Two |
| 8 | Sat 14 Sep 2013 | 41-2 v Exeter CityNorthampton Town 1-2 Exeter City | Sky Bet League Two |
| 9 | Sat 21 Sep 2013 | 40-3 v Mansfield TownMansfield Town 3-0 Northampton Town | Sky Bet League Two |
| 10 | Sat 28 Sep 2013 | 40-0 v MorecambeNorthampton Town 0-0 Morecambe | Sky Bet League Two |
| 11 | Sat 5 Oct 2013 | 42-0 v AFC WimbledonAFC Wimbledon 0-2 Northampton Town | Sky Bet League Two |
| 12 | Sat 12 Oct 2013 | 40-2 v Oxford UnitedOxford United 2-0 Northampton Town | Sky Bet League Two |
| 13 | Sat 19 Oct 2013 | 42-2 v Dagenham & RedbridgeNorthampton Town 2-2 Dagenham & Redbridge | Sky Bet League Two |
| 14 | Tue 22 Oct 2013 | 42-3 v RochdaleRochdale 3-2 Northampton Town | Sky Bet League Two |
| 15 | Sat 26 Oct 2013 | 41-1 v Cheltenham TownNorthampton Town 1-1 Cheltenham Town | Sky Bet League Two |
| 16 | Sat 2 Nov 2013 | 40-1 v Plymouth ArgylePlymouth Argyle 1-0 Northampton Town | Sky Bet League Two |
| 17 | Thu 26 Dec 2013 | 40-1 v Burton AlbionBurton Albion 1-0 Northampton Town | Sky Bet League Two |
| 18 | Sat 4 Jan 2014 | 42-1 v Newport CountyNewport County 1-2 Northampton Town | Sky Bet League Two |
| 19 | Sat 11 Jan 2014 | 40-2 v York CityNorthampton Town 0-2 York City | Sky Bet League Two |
| 20 | Sat 25 Jan 2014 | 41-3 v ChesterfieldNorthampton Town 1-3 Chesterfield | Sky Bet League Two |
| 21 | Sat 1 Feb 2014 | 41-1 v Cheltenham TownCheltenham Town 1-1 Northampton Town | Sky Bet League Two |
| 22 | Sat 8 Feb 2014 | 40-2 v Plymouth ArgyleNorthampton Town 0-2 Plymouth Argyle | Sky Bet League Two |
| 23 | Tue 11 Feb 2014 | 42-1 v Torquay UnitedTorquay United 1-2 Northampton Town | Sky Bet League Two |
| 24 | Sat 15 Feb 2014 | 40-2 v Fleetwood TownFleetwood Town 2-0 Northampton Town | Sky Bet League Two |
| 25 | Sat 22 Feb 2014 | 42-0 v Hartlepool UnitedNorthampton Town 2-0 Hartlepool United | Sky Bet League Two |
| 26 | Tue 25 Feb 2014 | 42-1 v Southend UnitedNorthampton Town 2-1 Southend United | Sky Bet League Two |
| 27 | Sat 1 Mar 2014 | 40-0 v Bristol RoversNorthampton Town 0-0 Bristol Rovers | Sky Bet League Two |
| 28 | Sat 8 Mar 2014 | 41-1 v Scunthorpe UnitedScunthorpe United 1-1 Northampton Town | Sky Bet League Two |
| 29 | Tue 11 Mar 2014 | 41-0 v Exeter CityExeter City 0-1 Northampton Town | Sky Bet League Two |
| 30 | Sat 15 Mar 2014 | 41-1 v Mansfield TownNorthampton Town 1-1 Mansfield Town | Sky Bet League Two |
| 31 | Tue 18 Mar 2014 | 40-3 v RochdaleNorthampton Town 0-3 Rochdale | Sky Bet League Two |
| 32 | Sat 22 Mar 2014 | 41-1 v MorecambeMorecambe 1-1 Northampton Town | Sky Bet League Two |
| 33 | Tue 25 Mar 2014 | 42-2 v AFC WimbledonNorthampton Town 2-2 AFC Wimbledon | Sky Bet League Two |
| 34 | Sat 29 Mar 2014 | 40-3 v BuryNorthampton Town 0-3 Bury | Sky Bet League Two |
| 35 | Sat 5 Apr 2014 | 41-0 v Accrington StanleyAccrington Stanley 0-1 Northampton Town | Sky Bet League Two |
| 36 | Mon 21 Apr 2014 | 40-1 v PortsmouthNorthampton Town 0-1 Portsmouth | Sky Bet League Two |
| 37 | Sat 26 Apr 2014 | 43-0 v Dagenham & RedbridgeDagenham & Redbridge 0-3 Northampton Town | Sky Bet League Two |
| 38 | Sat 3 May 2014 | 43-1 v Oxford UnitedNorthampton Town 3-1 Oxford United | Sky Bet League Two |
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