| 1 | Sat 9 Feb 2013 | 63-1 v RochdaleNorthampton Town 3-1 Rochdale | npower League Two |
| 2 | Sat 16 Feb 2013 | 62-1 v Southend UnitedSouthend United 1-2 Northampton Town | npower League Two |
| 3 | Tue 19 Feb 2013 | 61-1 v AFC WimbledonAFC Wimbledon 1-1 Northampton Town | npower League Two |
| 4 | Sat 23 Feb 2013 | 61-0 v Plymouth ArgyleNorthampton Town 1-0 Plymouth Argyle | npower League Two |
| 5 | Tue 26 Feb 2013 | 61-0 v Bristol RoversNorthampton Town 1-0 Bristol Rovers | npower League Two |
| 6 | Sat 2 Mar 2013 | 60-3 v Exeter CityExeter City 3-0 Northampton Town | npower League Two |
| 7 | Tue 12 Mar 2013 | 61-1 v MorecambeMorecambe 1-1 Northampton Town | npower League Two |
| 8 | Sat 23 Mar 2013 | 61-0 v Oxford UnitedNorthampton Town 1-0 Oxford United | npower League Two |
| 9 | Fri 29 Mar 2013 | 61-0 v Torquay UnitedNorthampton Town 1-0 Torquay United | npower League Two |
| 10 | Mon 1 Apr 2013 | 60-1 v Cheltenham TownCheltenham Town 1-0 Northampton Town | npower League Two |
| 11 | Sat 6 Apr 2013 | 60-1 v Bradford CityBradford City 1-0 Northampton Town | npower League Two |
| 12 | Sat 13 Apr 2013 | 60-2 v York CityNorthampton Town 0-2 York City | npower League Two |
| 13 | Tue 16 Apr 2013 | 60-0 v Wycombe WanderersWycombe Wanderers 0-0 Northampton Town | npower League Two |
| 14 | Sat 20 Apr 2013 | 62-2 v Port ValePort Vale 2-2 Northampton Town | npower League Two |
| 15 | Sat 27 Apr 2013 | 62-0 v BarnetNorthampton Town 2-0 Barnet | npower League Two |
| 16 | Thu 2 May 2013 | 61-0 v Cheltenham TownNorthampton Town 1-0 Cheltenham Town | npower League Two Play-off Semi Final |
| 17 | Sun 5 May 2013 | 61-0 v Cheltenham TownCheltenham Town 0-1 Northampton Town | npower League Two Play-off Semi Final |
| 18 | Sat 18 May 2013 | 60-3 v Bradford CityBradford City 3-0 Northampton Town | npower League Two Play-off Final |
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