| 1 | Tue 14 Aug 2012 | 22-1 v Cardiff CityNorthampton Town 2-1 Cardiff City | Capital One Cup First Round |
| 2 | Sat 18 Aug 2012 | 20-0 v RochdaleRochdale 0-0 Northampton Town | npower League Two |
| 3 | Tue 21 Aug 2012 | 22-1 v Rotherham UnitedNorthampton Town 2-1 Rotherham United | npower League Two |
| 4 | Sat 25 Aug 2012 | 23-3 v Southend UnitedNorthampton Town 3-3 Southend United | npower League Two |
| 5 | Tue 18 Sep 2012 | 21-0 v Dagenham & RedbridgeDagenham & Redbridge 0-1 Northampton Town | npower League Two |
| 6 | Sat 29 Sep 2012 | 23-3 v Burton AlbionBurton Albion 3-3 Northampton Town | npower League Two |
| 7 | Tue 2 Oct 2012 | 21-2 v GillinghamNorthampton Town 1-2 Gillingham | npower League Two |
| 8 | Sat 3 Nov 2012 | 21-1 v Bradford CityNorthampton Town 1-1 Bradford City | FA Cup with Budweiser First Round |
| 9 | Tue 6 Nov 2012 | 21-1 v York CityYork City 1-1 Northampton Town | npower League Two |
| 10 | Sat 16 Feb 2013 | 22-1 v Southend UnitedSouthend United 1-2 Northampton Town | npower League Two |
| 11 | Tue 19 Feb 2013 | 21-1 v AFC WimbledonAFC Wimbledon 1-1 Northampton Town | npower League Two |
| 12 | Sat 23 Feb 2013 | 21-0 v Plymouth ArgyleNorthampton Town 1-0 Plymouth Argyle | npower League Two |
| 13 | Tue 26 Feb 2013 | 21-0 v Bristol RoversNorthampton Town 1-0 Bristol Rovers | npower League Two |
| 14 | Sat 9 Mar 2013 | 22-0 v Accrington StanleyNorthampton Town 2-0 Accrington Stanley | npower League Two |
| 15 | Tue 12 Mar 2013 | 21-1 v MorecambeMorecambe 1-1 Northampton Town | npower League Two |
| 16 | Sat 23 Mar 2013 | 21-0 v Oxford UnitedNorthampton Town 1-0 Oxford United | npower League Two |
| 17 | Fri 29 Mar 2013 | 21-0 v Torquay UnitedNorthampton Town 1-0 Torquay United | npower League Two |
| 18 | Mon 1 Apr 2013 | 20-1 v Cheltenham TownCheltenham Town 1-0 Northampton Town | npower League Two |
| 19 | Sat 6 Apr 2013 | 20-1 v Bradford CityBradford City 1-0 Northampton Town | npower League Two |
| 20 | Sat 13 Apr 2013 | 20-2 v York CityNorthampton Town 0-2 York City | npower League Two |
| 21 | Tue 16 Apr 2013 | 20-0 v Wycombe WanderersWycombe Wanderers 0-0 Northampton Town | npower League Two |
| 22 | Sat 20 Apr 2013 | 22-2 v Port ValePort Vale 2-2 Northampton Town | npower League Two |
| 23 | Thu 2 May 2013 | 21-0 v Cheltenham TownNorthampton Town 1-0 Cheltenham Town | npower League Two Play-off Semi Final |
| 24 | Sun 5 May 2013 | 21-0 v Cheltenham TownCheltenham Town 0-1 Northampton Town | npower League Two Play-off Semi Final |
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