| 1 | Tue 14 Aug 2012 | 32-1 v Cardiff CityNorthampton Town 2-1 Cardiff City | Capital One Cup First Round |
| 2 | Sat 18 Aug 2012 | 30-0 v RochdaleRochdale 0-0 Northampton Town | npower League Two |
| 3 | Tue 21 Aug 2012 | 32-1 v Rotherham UnitedNorthampton Town 2-1 Rotherham United | npower League Two |
| 4 | Sat 25 Aug 2012 | 33-3 v Southend UnitedNorthampton Town 3-3 Southend United | npower League Two |
| 5 | Thu 30 Aug 2012 | 31-3 v Wolverhampton WanderersNorthampton Town 1-3 Wolverhampton Wanderers | Capital One Cup Second Round |
| 6 | Sat 1 Sep 2012 | 32-3 v Plymouth ArgylePlymouth Argyle 3-2 Northampton Town | npower League Two |
| 7 | Tue 4 Sep 2012 | 31-0 v Milton Keynes DonsNorthampton Town 1-0 Milton Keynes Dons | Johnstone's Paint Trophy First Round |
| 8 | Sat 8 Sep 2012 | 32-0 v AFC WimbledonNorthampton Town 2-0 AFC Wimbledon | npower League Two |
| 9 | Sat 15 Sep 2012 | 30-1 v Fleetwood TownFleetwood Town 1-0 Northampton Town | npower League Two |
| 10 | Tue 18 Sep 2012 | 31-0 v Dagenham & RedbridgeDagenham & Redbridge 0-1 Northampton Town | npower League Two |
| 11 | Sat 22 Sep 2012 | 30-0 v ChesterfieldNorthampton Town 0-0 Chesterfield | npower League Two |
| 12 | Sat 29 Sep 2012 | 33-3 v Burton AlbionBurton Albion 3-3 Northampton Town | npower League Two |
| 13 | Tue 2 Oct 2012 | 31-2 v GillinghamNorthampton Town 1-2 Gillingham | npower League Two |
| 14 | Sat 6 Oct 2012 | 31-3 v Bristol RoversBristol Rovers 3-1 Northampton Town | npower League Two |
| 15 | Fri 19 Oct 2012 | 30-4 v BarnetBarnet 4-0 Northampton Town | npower League Two |
| 16 | Tue 23 Oct 2012 | 30-1 v Bradford CityNorthampton Town 0-1 Bradford City | npower League Two |
| 17 | Sat 27 Oct 2012 | 32-0 v Port ValeNorthampton Town 2-0 Port Vale | npower League Two |
| 18 | Sat 3 Nov 2012 | 31-1 v Bradford CityNorthampton Town 1-1 Bradford City | FA Cup with Budweiser First Round |
| 19 | Tue 6 Nov 2012 | 31-1 v York CityYork City 1-1 Northampton Town | npower League Two |
| 20 | Sat 10 Nov 2012 | 34-2 v Accrington StanleyAccrington Stanley 2-4 Northampton Town | npower League Two |
| 21 | Tue 13 Nov 2012 | 33-3 v Bradford CityBradford City 3-3 Northampton Town | FA Cup with Budweiser First Round Replay |
| 22 | Sat 17 Nov 2012 | 33-1 v Wycombe WanderersNorthampton Town 3-1 Wycombe Wanderers | npower League Two |
| 23 | Tue 20 Nov 2012 | 33-0 v MorecambeNorthampton Town 3-0 Morecambe | npower League Two |
| 24 | Wed 5 Dec 2012 | 30-3 v Leyton OrientNorthampton Town 0-3 Leyton Orient | Johnstone's Paint Trophy Southern Area Quarter Final |
| 25 | Sat 8 Dec 2012 | 32-3 v Cheltenham TownNorthampton Town 2-3 Cheltenham Town | npower League Two |
| 26 | Tue 1 Jan 2013 | 33-1 v Dagenham & RedbridgeNorthampton Town 3-1 Dagenham & Redbridge | npower League Two |
| 27 | Sat 5 Jan 2013 | 33-1 v Fleetwood TownNorthampton Town 3-1 Fleetwood Town | npower League Two |
| 28 | Sat 12 Jan 2013 | 30-3 v ChesterfieldChesterfield 3-0 Northampton Town | npower League Two |
| 29 | Sat 19 Jan 2013 | 31-0 v Burton AlbionNorthampton Town 1-0 Burton Albion | npower League Two |
| 30 | Tue 22 Jan 2013 | 32-1 v Aldershot TownAldershot Town 1-2 Northampton Town | npower League Two |
| 31 | Tue 29 Jan 2013 | 30-2 v GillinghamGillingham 2-0 Northampton Town | npower League Two |
| 32 | Sat 2 Feb 2013 | 31-3 v Rotherham UnitedRotherham United 3-1 Northampton Town | npower League Two |
| 33 | Sat 9 Feb 2013 | 33-1 v RochdaleNorthampton Town 3-1 Rochdale | npower League Two |
| 34 | Sat 16 Feb 2013 | 32-1 v Southend UnitedSouthend United 1-2 Northampton Town | npower League Two |
| 35 | Tue 19 Feb 2013 | 31-1 v AFC WimbledonAFC Wimbledon 1-1 Northampton Town | npower League Two |
| 36 | Sat 2 Mar 2013 | 30-3 v Exeter CityExeter City 3-0 Northampton Town | npower League Two |
| 37 | Sat 9 Mar 2013 | 32-0 v Accrington StanleyNorthampton Town 2-0 Accrington Stanley | npower League Two |
| 38 | Tue 12 Mar 2013 | 31-1 v MorecambeMorecambe 1-1 Northampton Town | npower League Two |
| 39 | Sat 23 Mar 2013 | 31-0 v Oxford UnitedNorthampton Town 1-0 Oxford United | npower League Two |
| 40 | Fri 29 Mar 2013 | 31-0 v Torquay UnitedNorthampton Town 1-0 Torquay United | npower League Two |
| 41 | Mon 1 Apr 2013 | 30-1 v Cheltenham TownCheltenham Town 1-0 Northampton Town | npower League Two |
| 42 | Sat 6 Apr 2013 | 30-1 v Bradford CityBradford City 1-0 Northampton Town | npower League Two |
| 43 | Sat 13 Apr 2013 | 30-2 v York CityNorthampton Town 0-2 York City | npower League Two |
| 44 | Tue 16 Apr 2013 | 30-0 v Wycombe WanderersWycombe Wanderers 0-0 Northampton Town | npower League Two |
| 45 | Sat 18 May 2013 | 30-3 v Bradford CityBradford City 3-0 Northampton Town | npower League Two Play-off Final |
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