| 1 | Sat 1 Sep 2012 | 72-3 v Plymouth ArgylePlymouth Argyle 3-2 Northampton Town | npower League Two |
| 2 | Tue 4 Sep 2012 | 71-0 v Milton Keynes DonsNorthampton Town 1-0 Milton Keynes Dons | Johnstone's Paint Trophy First Round |
| 3 | Sat 8 Sep 2012 | 72-0 v AFC WimbledonNorthampton Town 2-0 AFC Wimbledon | npower League Two |
| 4 | Tue 18 Sep 2012 | 71-0 v Dagenham & RedbridgeDagenham & Redbridge 0-1 Northampton Town | npower League Two |
| 5 | Sat 22 Sep 2012 | 70-0 v ChesterfieldNorthampton Town 0-0 Chesterfield | npower League Two |
| 6 | Sat 29 Sep 2012 | 73-3 v Burton AlbionBurton Albion 3-3 Northampton Town | npower League Two |
| 7 | Tue 2 Oct 2012 | 71-2 v GillinghamNorthampton Town 1-2 Gillingham | npower League Two |
| 8 | Fri 19 Oct 2012 | 70-4 v BarnetBarnet 4-0 Northampton Town | npower League Two |
| 9 | Sat 27 Oct 2012 | 72-0 v Port ValeNorthampton Town 2-0 Port Vale | npower League Two |
| 10 | Sat 10 Nov 2012 | 74-2 v Accrington StanleyAccrington Stanley 2-4 Northampton Town | npower League Two |
| 11 | Tue 13 Nov 2012 | 73-3 v Bradford CityBradford City 3-3 Northampton Town | FA Cup with Budweiser First Round Replay |
| 12 | Sat 17 Nov 2012 | 73-1 v Wycombe WanderersNorthampton Town 3-1 Wycombe Wanderers | npower League Two |
| 13 | Tue 20 Nov 2012 | 73-0 v MorecambeNorthampton Town 3-0 Morecambe | npower League Two |
| 14 | Sat 24 Nov 2012 | 71-2 v Oxford UnitedOxford United 2-1 Northampton Town | npower League Two |
| 15 | Wed 5 Dec 2012 | 70-3 v Leyton OrientNorthampton Town 0-3 Leyton Orient | Johnstone's Paint Trophy Southern Area Quarter Final |
| 16 | Sat 8 Dec 2012 | 72-3 v Cheltenham TownNorthampton Town 2-3 Cheltenham Town | npower League Two |
| 17 | Sat 22 Dec 2012 | 72-0 v Aldershot TownNorthampton Town 2-0 Aldershot Town | npower League Two |
| 18 | Sat 5 Jan 2013 | 73-1 v Fleetwood TownNorthampton Town 3-1 Fleetwood Town | npower League Two |
| 19 | Sat 12 Jan 2013 | 70-3 v ChesterfieldChesterfield 3-0 Northampton Town | npower League Two |
| 20 | Sat 19 Jan 2013 | 71-0 v Burton AlbionNorthampton Town 1-0 Burton Albion | npower League Two |
| 21 | Tue 29 Jan 2013 | 70-2 v GillinghamGillingham 2-0 Northampton Town | npower League Two |
| 22 | Tue 19 Feb 2013 | 71-1 v AFC WimbledonAFC Wimbledon 1-1 Northampton Town | npower League Two |
| 23 | Tue 26 Feb 2013 | 71-0 v Bristol RoversNorthampton Town 1-0 Bristol Rovers | npower League Two |
| 24 | Sat 9 Mar 2013 | 72-0 v Accrington StanleyNorthampton Town 2-0 Accrington Stanley | npower League Two |
| 25 | Tue 12 Mar 2013 | 71-1 v MorecambeMorecambe 1-1 Northampton Town | npower League Two |
| 26 | Sat 23 Mar 2013 | 71-0 v Oxford UnitedNorthampton Town 1-0 Oxford United | npower League Two |
| 27 | Fri 29 Mar 2013 | 71-0 v Torquay UnitedNorthampton Town 1-0 Torquay United | npower League Two |
| 28 | Mon 1 Apr 2013 | 70-1 v Cheltenham TownCheltenham Town 1-0 Northampton Town | npower League Two |
| 29 | Sat 6 Apr 2013 | 70-1 v Bradford CityBradford City 1-0 Northampton Town | npower League Two |
| 30 | Thu 2 May 2013 | 71-0 v Cheltenham TownNorthampton Town 1-0 Cheltenham Town | npower League Two Play-off Semi Final |
| 31 | Sat 18 May 2013 | 70-3 v Bradford CityBradford City 3-0 Northampton Town | npower League Two Play-off Final |
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