| 1 | Tue 20 Nov 2012 | 303-0 v MorecambeNorthampton Town 3-0 Morecambe | npower League Two |
| 2 | Sat 24 Nov 2012 | 301-2 v Oxford UnitedOxford United 2-1 Northampton Town | npower League Two |
| 3 | Sat 8 Dec 2012 | 302-3 v Cheltenham TownNorthampton Town 2-3 Cheltenham Town | npower League Two |
| 4 | Sat 15 Dec 2012 | 301-1 v Torquay UnitedTorquay United 1-1 Northampton Town | npower League Two |
| 5 | Sat 22 Dec 2012 | 302-0 v Aldershot TownNorthampton Town 2-0 Aldershot Town | npower League Two |
| 6 | Sat 5 Jan 2013 | 303-1 v Fleetwood TownNorthampton Town 3-1 Fleetwood Town | npower League Two |
| 7 | Sat 12 Jan 2013 | 300-3 v ChesterfieldChesterfield 3-0 Northampton Town | npower League Two |
| 8 | Sat 19 Jan 2013 | 301-0 v Burton AlbionNorthampton Town 1-0 Burton Albion | npower League Two |
| 9 | Tue 22 Jan 2013 | 302-1 v Aldershot TownAldershot Town 1-2 Northampton Town | npower League Two |
| 10 | Tue 29 Jan 2013 | 300-2 v GillinghamGillingham 2-0 Northampton Town | npower League Two |
| 11 | Sat 2 Feb 2013 | 301-3 v Rotherham UnitedRotherham United 3-1 Northampton Town | npower League Two |
| 12 | Sat 9 Feb 2013 | 303-1 v RochdaleNorthampton Town 3-1 Rochdale | npower League Two |
| 13 | Tue 19 Feb 2013 | 301-1 v AFC WimbledonAFC Wimbledon 1-1 Northampton Town | npower League Two |
| 14 | Sat 23 Feb 2013 | 301-0 v Plymouth ArgyleNorthampton Town 1-0 Plymouth Argyle | npower League Two |
| 15 | Tue 26 Feb 2013 | 301-0 v Bristol RoversNorthampton Town 1-0 Bristol Rovers | npower League Two |
| 16 | Sat 2 Mar 2013 | 300-3 v Exeter CityExeter City 3-0 Northampton Town | npower League Two |
| 17 | Sat 9 Mar 2013 | 302-0 v Accrington StanleyNorthampton Town 2-0 Accrington Stanley | npower League Two |
| 18 | Tue 12 Mar 2013 | 301-1 v MorecambeMorecambe 1-1 Northampton Town | npower League Two |
| 19 | Sat 23 Mar 2013 | 301-0 v Oxford UnitedNorthampton Town 1-0 Oxford United | npower League Two |
| 20 | Fri 29 Mar 2013 | 301-0 v Torquay UnitedNorthampton Town 1-0 Torquay United | npower League Two |
| 21 | Mon 1 Apr 2013 | 300-1 v Cheltenham TownCheltenham Town 1-0 Northampton Town | npower League Two |
| 22 | Sat 6 Apr 2013 | 300-1 v Bradford CityBradford City 1-0 Northampton Town | npower League Two |
| 23 | Sat 13 Apr 2013 | 300-2 v York CityNorthampton Town 0-2 York City | npower League Two |
| 24 | Tue 16 Apr 2013 | 300-0 v Wycombe WanderersWycombe Wanderers 0-0 Northampton Town | npower League Two |
| 25 | Sat 20 Apr 2013 | 302-2 v Port ValePort Vale 2-2 Northampton Town | npower League Two |
| 26 | Sat 27 Apr 2013 | 302-0 v BarnetNorthampton Town 2-0 Barnet | npower League Two |
| 27 | Thu 2 May 2013 | 301-0 v Cheltenham TownNorthampton Town 1-0 Cheltenham Town | npower League Two Play-off Semi Final |
| 28 | Sun 5 May 2013 | 301-0 v Cheltenham TownCheltenham Town 0-1 Northampton Town | npower League Two Play-off Semi Final |
| 29 | Sat 18 May 2013 | 300-3 v Bradford CityBradford City 3-0 Northampton Town | npower League Two Play-off Final |
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