| 1 | Tue 21 Aug 2012 | 22-2 v York CityMorecambe 2-2 York City | npower League Two |
| 2 | Sat 25 Aug 2012 | 21-3 v Port ValeMorecambe 1-3 Port Vale | npower League Two |
| 3 | Tue 28 Aug 2012 | 20-2 v SunderlandSunderland 2-0 Morecambe | Capital One Cup Second Round |
| 4 | Sat 1 Sep 2012 | 23-0 v Bristol RoversBristol Rovers 0-3 Morecambe | npower League Two |
| 5 | Tue 4 Sep 2012 | 22-0 v Accrington StanleyAccrington Stanley 0-2 Morecambe | Johnstone's Paint Trophy First Round |
| 6 | Sat 8 Sep 2012 | 20-4 v Fleetwood TownMorecambe 0-4 Fleetwood Town | npower League Two |
| 7 | Sat 15 Sep 2012 | 20-0 v Aldershot TownAldershot Town 0-0 Morecambe | npower League Two |
| 8 | Tue 18 Sep 2012 | 21-3 v Bradford CityBradford City 3-1 Morecambe | npower League Two |
| 9 | Sat 22 Sep 2012 | 22-3 v Plymouth ArgyleMorecambe 2-3 Plymouth Argyle | npower League Two |
| 10 | Fri 28 Sep 2012 | 20-2 v Cheltenham TownCheltenham Town 2-0 Morecambe | npower League Two |
| 11 | Tue 2 Oct 2012 | 22-0 v ChesterfieldMorecambe 2-0 Chesterfield | npower League Two |
| 12 | Sat 6 Oct 2012 | 20-0 v Burton AlbionMorecambe 0-0 Burton Albion | npower League Two |
| 13 | Tue 9 Oct 2012 | 22-4 v Preston North EndMorecambe 2-4 Preston North End | Johnstone's Paint Trophy Second Round |
| 14 | Sat 13 Oct 2012 | 22-1 v RochdaleRochdale 1-2 Morecambe | npower League Two |
| 15 | Sat 20 Oct 2012 | 21-0 v Southend UnitedMorecambe 1-0 Southend United | npower League Two |
| 16 | Tue 23 Oct 2012 | 21-2 v Rotherham UnitedRotherham United 2-1 Morecambe | npower League Two |
| 17 | Sat 27 Oct 2012 | 20-1 v Torquay UnitedTorquay United 1-0 Morecambe | npower League Two |
| 18 | Sat 3 Nov 2012 | 21-1 v RochdaleMorecambe 1-1 Rochdale | FA Cup with Budweiser First Round |
| 19 | Tue 6 Nov 2012 | 20-0 v Accrington StanleyMorecambe 0-0 Accrington Stanley | npower League Two |
| 20 | Sat 10 Nov 2012 | 24-1 v BarnetMorecambe 4-1 Barnet | npower League Two |
| 21 | Tue 13 Nov 2012 | 21-0 v RochdaleRochdale 0-1 Morecambe | FA Cup with Budweiser First Round Replay |
| 22 | Sat 17 Nov 2012 | 21-2 v GillinghamGillingham 2-1 Morecambe | npower League Two |
| 23 | Tue 20 Nov 2012 | 20-3 v Northampton TownNorthampton Town 3-0 Morecambe | npower League Two |
| 24 | Sat 24 Nov 2012 | 23-1 v AFC WimbledonMorecambe 3-1 AFC Wimbledon | npower League Two |
| 25 | Sat 1 Dec 2012 | 21-2 v Coventry CityCoventry City 2-1 Morecambe | FA Cup with Budweiser Second Round |
| 26 | Sat 8 Dec 2012 | 22-2 v Wycombe WanderersWycombe Wanderers 2-2 Morecambe | npower League Two |
| 27 | Sat 15 Dec 2012 | 21-1 v Oxford UnitedMorecambe 1-1 Oxford United | npower League Two |
| 28 | Wed 26 Dec 2012 | 20-1 v Fleetwood TownFleetwood Town 1-0 Morecambe | npower League Two |
| 29 | Tue 1 Jan 2013 | 20-0 v Bradford CityMorecambe 0-0 Bradford City | npower League Two |
| 30 | Tue 8 Jan 2013 | 22-1 v Dagenham & RedbridgeMorecambe 2-1 Dagenham & Redbridge | npower League Two |
| 31 | Sat 12 Jan 2013 | 21-2 v Plymouth ArgylePlymouth Argyle 2-1 Morecambe | npower League Two |
| 32 | Fri 18 Jan 2013 | 20-0 v Cheltenham TownMorecambe 0-0 Cheltenham Town | npower League Two |
| 33 | Sat 26 Jan 2013 | 22-1 v Dagenham & RedbridgeDagenham & Redbridge 1-2 Morecambe | npower League Two |
| 34 | Sat 2 Feb 2013 | 24-1 v York CityYork City 1-4 Morecambe | npower League Two |
| 35 | Sat 9 Feb 2013 | 20-3 v Exeter CityMorecambe 0-3 Exeter City | npower League Two |
| 36 | Tue 12 Feb 2013 | 22-1 v Aldershot TownMorecambe 2-1 Aldershot Town | npower League Two |
| 37 | Sat 16 Feb 2013 | 21-0 v Port ValePort Vale 0-1 Morecambe | npower League Two |
| 38 | Sat 23 Feb 2013 | 21-1 v Bristol RoversMorecambe 1-1 Bristol Rovers | npower League Two |
| 39 | Tue 26 Feb 2013 | 22-3 v Burton AlbionBurton Albion 3-2 Morecambe | npower League Two |
| 40 | Sat 2 Mar 2013 | 23-0 v RochdaleMorecambe 3-0 Rochdale | npower League Two |
| 41 | Sat 9 Mar 2013 | 21-4 v BarnetBarnet 4-1 Morecambe | npower League Two |
| 42 | Tue 12 Mar 2013 | 21-1 v Northampton TownMorecambe 1-1 Northampton Town | npower League Two |
| 43 | Sat 16 Mar 2013 | 21-1 v GillinghamMorecambe 1-1 Gillingham | npower League Two |
| 44 | Sat 23 Mar 2013 | 20-2 v AFC WimbledonAFC Wimbledon 2-0 Morecambe | npower League Two |
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