| 1 | Tue 9 Oct 2012 | 42-4 v Preston North EndMorecambe 2-4 Preston North End | Johnstone's Paint Trophy Second Round |
| 2 | Sat 13 Oct 2012 | 42-1 v RochdaleRochdale 1-2 Morecambe | npower League Two |
| 3 | Sat 20 Oct 2012 | 41-0 v Southend UnitedMorecambe 1-0 Southend United | npower League Two |
| 4 | Tue 23 Oct 2012 | 41-2 v Rotherham UnitedRotherham United 2-1 Morecambe | npower League Two |
| 5 | Sat 27 Oct 2012 | 40-1 v Torquay UnitedTorquay United 1-0 Morecambe | npower League Two |
| 6 | Tue 6 Nov 2012 | 40-0 v Accrington StanleyMorecambe 0-0 Accrington Stanley | npower League Two |
| 7 | Sat 10 Nov 2012 | 44-1 v BarnetMorecambe 4-1 Barnet | npower League Two |
| 8 | Tue 20 Nov 2012 | 40-3 v Northampton TownNorthampton Town 3-0 Morecambe | npower League Two |
| 9 | Sat 24 Nov 2012 | 43-1 v AFC WimbledonMorecambe 3-1 AFC Wimbledon | npower League Two |
| 10 | Sat 8 Dec 2012 | 42-2 v Wycombe WanderersWycombe Wanderers 2-2 Morecambe | npower League Two |
| 11 | Sat 15 Dec 2012 | 41-1 v Oxford UnitedMorecambe 1-1 Oxford United | npower League Two |
| 12 | Wed 26 Dec 2012 | 40-1 v Fleetwood TownFleetwood Town 1-0 Morecambe | npower League Two |
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