| 1 | Sat 22 Sep 2012 | 44-1 v BuryBury 1-4 Milton Keynes Dons | npower League One |
| 2 | Sun 14 Oct 2012 | 40-0 v Preston North EndPreston North End 0-0 Milton Keynes Dons | npower League One |
| 3 | Sat 20 Oct 2012 | 40-1 v StevenageMilton Keynes Dons 0-1 Stevenage | npower League One |
| 4 | Tue 23 Oct 2012 | 40-2 v Crawley TownCrawley Town 2-0 Milton Keynes Dons | npower League One |
| 5 | Wed 7 Nov 2012 | 41-0 v Leyton OrientMilton Keynes Dons 1-0 Leyton Orient | npower League One |
| 6 | Sat 10 Nov 2012 | 41-0 v Sheffield UnitedMilton Keynes Dons 1-0 Sheffield United | npower League One |
| 7 | Tue 13 Nov 2012 | 46-1 v Cambridge CityMilton Keynes Dons 6-1 Cambridge City | FA Cup with Budweiser First Round Replay |
| 8 | Fri 16 Nov 2012 | 41-0 v Tranmere RoversTranmere Rovers 0-1 Milton Keynes Dons | npower League One |
| 9 | Sun 2 Dec 2012 | 42-1 v AFC WimbledonMilton Keynes Dons 2-1 AFC Wimbledon | FA Cup with Budweiser Second Round |
| 10 | Sat 15 Dec 2012 | 41-0 v Hartlepool UnitedMilton Keynes Dons 1-0 Hartlepool United | npower League One |
| 11 | Wed 26 Dec 2012 | 42-4 v WalsallMilton Keynes Dons 2-4 Walsall | npower League One |
| 12 | Tue 1 Jan 2013 | 42-1 v Notts CountyNotts County 1-2 Milton Keynes Dons | npower League One |
| 13 | Sat 5 Jan 2013 | 40-0 v Sheffield WednesdaySheffield Wednesday 0-0 Milton Keynes Dons | FA Cup with Budweiser Third Round |
| 14 | Tue 15 Jan 2013 | 42-0 v Sheffield WednesdayMilton Keynes Dons 2-0 Sheffield Wednesday | FA Cup with Budweiser Third Round Replay |
| 15 | Tue 29 Jan 2013 | 41-2 v Yeovil TownYeovil Town 2-1 Milton Keynes Dons | npower League One |
| 16 | Sat 2 Feb 2013 | 40-3 v BournemouthMilton Keynes Dons 0-3 Bournemouth | npower League One |
| 17 | Sat 23 Feb 2013 | 41-1 v Carlisle UnitedCarlisle United 1-1 Milton Keynes Dons | npower League One |
| 18 | Tue 5 Mar 2013 | 43-0 v Doncaster RoversMilton Keynes Dons 3-0 Doncaster Rovers | npower League One |
| 19 | Sat 9 Mar 2013 | 40-0 v Sheffield UnitedSheffield United 0-0 Milton Keynes Dons | npower League One |
| 20 | Tue 12 Mar 2013 | 42-3 v Shrewsbury TownMilton Keynes Dons 2-3 Shrewsbury Town | npower League One |
| 21 | Fri 29 Mar 2013 | 42-0 v Hartlepool UnitedHartlepool United 0-2 Milton Keynes Dons | npower League One |
| 22 | Mon 1 Apr 2013 | 42-0 v BrentfordMilton Keynes Dons 2-0 Brentford | npower League One |
| 23 | Sat 6 Apr 2013 | 40-0 v Crawley TownMilton Keynes Dons 0-0 Crawley Town | npower League One |
| 24 | Tue 9 Apr 2013 | 42-0 v Swindon TownMilton Keynes Dons 2-0 Swindon Town | npower League One |
| 25 | Sat 13 Apr 2013 | 40-2 v Leyton OrientLeyton Orient 2-0 Milton Keynes Dons | npower League One |
| 26 | Tue 16 Apr 2013 | 42-0 v Colchester UnitedColchester United 0-2 Milton Keynes Dons | npower League One |
| 27 | Sat 20 Apr 2013 | 40-1 v Scunthorpe UnitedMilton Keynes Dons 0-1 Scunthorpe United | npower League One |
| 28 | Sat 27 Apr 2013 | 42-0 v StevenageStevenage 0-2 Milton Keynes Dons | npower League One |
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