| 1 | Sat 11 Aug 2012 | 22-2 v GatesheadLuton Town 2-2 Gateshead | Blue Square Bet Premier |
| 2 | Tue 14 Aug 2012 | 22-0 v Kidderminster HarriersKidderminster Harriers 0-2 Luton Town | Blue Square Bet Premier |
| 3 | Fri 17 Aug 2012 | 22-1 v HydeHyde 1-2 Luton Town | Blue Square Bet Premier |
| 4 | Sat 25 Aug 2012 | 20-1 v AFC Telford UnitedLuton Town 0-1 AFC Telford United | Blue Square Bet Premier |
| 5 | Mon 27 Aug 2012 | 23-1 v Ebbsfleet UnitedEbbsfleet United 1-3 Luton Town | Blue Square Bet Premier |
| 6 | Sat 1 Sep 2012 | 24-1 v Macclesfield TownLuton Town 4-1 Macclesfield Town | Blue Square Bet Premier |
| 7 | Tue 4 Sep 2012 | 23-2 v Cambridge UnitedLuton Town 3-2 Cambridge United | Blue Square Bet Premier |
| 8 | Sat 15 Sep 2012 | 20-0 v WrexhamLuton Town 0-0 Wrexham | Blue Square Bet Premier |
| 9 | Tue 25 Sep 2012 | 22-1 v TamworthTamworth 1-2 Luton Town | Blue Square Bet Premier |
| 10 | Sat 29 Sep 2012 | 23-1 v SouthportLuton Town 3-1 Southport | Blue Square Bet Premier |
| 11 | Sat 6 Oct 2012 | 22-1 v Lincoln CityLincoln City 1-2 Luton Town | Blue Square Bet Premier |
| 12 | Sat 13 Oct 2012 | 22-0 v Nuneaton TownLuton Town 2-0 Nuneaton Town | Blue Square Bet Premier |
| 13 | Sat 27 Oct 2012 | 22-1 v Forest Green RoversForest Green Rovers 1-2 Luton Town | Blue Square Bet Premier |
| 14 | Sat 3 Nov 2012 | 21-1 v Nuneaton TownLuton Town 1-1 Nuneaton Town | FA Cup with Budweiser First Round |
| 15 | Tue 6 Nov 2012 | 20-1 v Hereford UnitedHereford United 1-0 Luton Town | Blue Square Bet Premier |
| 16 | Tue 13 Nov 2012 | 22-0 v Nuneaton TownNuneaton Town 0-2 Luton Town | FA Cup with Budweiser First Round Replay |
| 17 | Sun 18 Nov 2012 | 22-2 v Mansfield TownMansfield Town 2-2 Luton Town | Blue Square Bet Premier |
| 18 | Sat 1 Dec 2012 | 22-1 v Dorchester TownLuton Town 2-1 Dorchester Town | FA Cup with Budweiser Second Round |
| 19 | Sat 8 Dec 2012 | 23-0 v Alfreton TownLuton Town 3-0 Alfreton Town | Blue Square Bet Premier |
| 20 | Tue 11 Dec 2012 | 22-5 v Newport CountyNewport County 5-2 Luton Town | Blue Square Bet Premier |
| 21 | Tue 1 Jan 2013 | 21-3 v WokingWoking 3-1 Luton Town | Blue Square Bet Premier |
| 22 | Sat 5 Jan 2013 | 21-0 v Wolverhampton WanderersLuton Town 1-0 Wolverhampton Wanderers | FA Cup with Budweiser Third Round |
| 23 | Tue 8 Jan 2013 | 26-1 v BarrowLuton Town 6-1 Barrow | Blue Square Bet Premier |
| 24 | Tue 15 Jan 2013 | 20-0 v AFC Telford UnitedAFC Telford United 0-0 Luton Town | Blue Square Bet Premier |
| 25 | Sat 26 Jan 2013 | 21-0 v Norwich CityNorwich City 0-1 Luton Town | FA Cup with Budweiser Fourth Round |
| 26 | Sat 2 Feb 2013 | 20-1 v BarrowBarrow 1-0 Luton Town | Blue Square Bet Premier |
| 27 | Tue 19 Feb 2013 | 21-1 v Macclesfield TownMacclesfield Town 1-1 Luton Town | Blue Square Bet Premier |
| 28 | Sat 23 Feb 2013 | 22-3 v Mansfield TownLuton Town 2-3 Mansfield Town | Blue Square Bet Premier |
| 29 | Tue 26 Feb 2013 | 20-2 v Braintree TownBraintree Town 2-0 Luton Town | Blue Square Bet Premier |
| 30 | Sat 2 Mar 2013 | 21-0 v Stockport CountyStockport County 0-1 Luton Town | Blue Square Bet Premier |
| 31 | Tue 5 Mar 2013 | 20-0 v Nuneaton TownNuneaton Town 0-0 Luton Town | Blue Square Bet Premier |
| 32 | Tue 12 Mar 2013 | 21-2 v HydeLuton Town 1-2 Hyde | Blue Square Bet Premier |
| 33 | Sat 16 Mar 2013 | 20-0 v WrexhamWrexham 0-0 Luton Town | Blue Square Bet Premier |
| 34 | Tue 19 Mar 2013 | 21-0 v Stockport CountyLuton Town 1-0 Stockport County | Blue Square Bet Premier |
| 35 | Sat 23 Mar 2013 | 20-0 v TamworthLuton Town 0-0 Tamworth | Blue Square Bet Premier |
| 36 | Sat 30 Mar 2013 | 22-2 v Cambridge UnitedCambridge United 2-2 Luton Town | Blue Square Bet Premier |
| 37 | Mon 1 Apr 2013 | 21-2 v Kidderminster HarriersLuton Town 1-2 Kidderminster Harriers | Blue Square Bet Premier |
| 38 | Sat 6 Apr 2013 | 21-5 v GatesheadGateshead 5-1 Luton Town | Blue Square Bet Premier |
| 39 | Fri 12 Apr 2013 | 21-1 v Grimsby TownLuton Town 1-1 Grimsby Town | Blue Square Bet Premier |
| 40 | Tue 16 Apr 2013 | 22-2 v Newport CountyLuton Town 2-2 Newport County | Blue Square Bet Premier |
| 41 | Thu 18 Apr 2013 | 22-0 v Ebbsfleet UnitedLuton Town 2-0 Ebbsfleet United | Blue Square Bet Premier |
| 42 | Sat 20 Apr 2013 | 23-1 v SouthportSouthport 1-3 Luton Town | Blue Square Bet Premier |
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