| 1 | Sat 13 Aug 2016 | 13-1 v Bognor Regis TownBognor Regis Town 1-3 Lowestoft Town | Ryman League Premier Division |
| 2 | Tue 16 Aug 2016 | 11-1 v Needham MarketLowestoft Town 1-1 Needham Market | Ryman League Premier Division |
| 3 | Sat 20 Aug 2016 | 10-1 v Tonbridge AngelsLowestoft Town 0-1 Tonbridge Angels | Ryman League Premier Division |
| 4 | Sat 10 Sep 2016 | 11-2 v Staines TownStaines Town 2-1 Lowestoft Town | Ryman League Premier Division |
| 5 | Tue 13 Sep 2016 | 11-2 v AFC SudburyAFC Sudbury 2-1 Lowestoft Town | Alan Turvey Trophy First Round |
| 6 | Sat 24 Sep 2016 | 11-1 v Wingate & FinchleyWingate & Finchley 1-1 Lowestoft Town | Ryman League Premier Division |
| 7 | Wed 28 Sep 2016 | 13-0 v Grays AthleticGrays Athletic 0-3 Lowestoft Town | Ryman League Premier Division |
| 8 | Sat 1 Oct 2016 | 14-0 v Harlow TownLowestoft Town 4-0 Harlow Town | Ryman League Premier Division |
| 9 | Tue 4 Oct 2016 | 10-3 v Dulwich HamletLowestoft Town 0-3 Dulwich Hamlet | Ryman League Premier Division |
| 10 | Sat 8 Oct 2016 | 13-3 v HendonLowestoft Town 3-3 Hendon | Ryman League Premier Division |
| 11 | Sat 5 Nov 2016 | 11-3 v LeatherheadLeatherhead 3-1 Lowestoft Town | Ryman League Premier Division |
| 12 | Tue 8 Nov 2016 | 10-3 v Canvey IslandLowestoft Town 0-3 Canvey Island | Ryman League Premier Division |
| 13 | Sat 12 Nov 2016 | 12-1 v Grays AthleticLowestoft Town 2-1 Grays Athletic | Ryman League Premier Division |
| 14 | Sat 19 Nov 2016 | 11-0 v Burgess Hill TownLowestoft Town 1-0 Burgess Hill Town | Ryman League Premier Division |
| 15 | Sat 26 Nov 2016 | 10-3 v Canvey IslandCanvey Island 3-0 Lowestoft Town | Ryman League Premier Division |
| 16 | Sat 3 Dec 2016 | 12-1 v Wingate & FinchleyLowestoft Town 2-1 Wingate & Finchley | Ryman League Premier Division |
| 17 | Sat 10 Dec 2016 | 15-2 v KingstonianKingstonian 2-5 Lowestoft Town | Ryman League Premier Division |
| 18 | Tue 13 Dec 2016 | 12-2 v Enfield TownEnfield Town 2-2 Lowestoft Town | Ryman League Premier Division |
| 19 | Sat 17 Dec 2016 | 10-4 v WorthingLowestoft Town 0-4 Worthing | Ryman League Premier Division |
| 20 | Mon 26 Dec 2016 | 13-2 v LeistonLowestoft Town 3-2 Leiston | Ryman League Premier Division |
| 21 | Sat 31 Dec 2016 | 12-4 v Harrow BoroughHarrow Borough 4-2 Lowestoft Town | Ryman League Premier Division |
| 22 | Sat 4 Feb 2017 | 170-1 v Metropolitan PoliceLowestoft Town 0-1 Metropolitan Police | Ryman League Premier Division |
| 23 | Sat 11 Feb 2017 | 10-0 v HendonHendon 0-0 Lowestoft Town | Ryman League Premier Division |
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