| 1 | Sat 13 Aug 2016 | 43-1 v Bognor Regis TownBognor Regis Town 1-3 Lowestoft Town | Ryman League Premier Division |
| 2 | Tue 16 Aug 2016 | 41-1 v Needham MarketLowestoft Town 1-1 Needham Market | Ryman League Premier Division |
| 3 | Sat 20 Aug 2016 | 40-1 v Tonbridge AngelsLowestoft Town 0-1 Tonbridge Angels | Ryman League Premier Division |
| 4 | Tue 23 Aug 2016 | 41-0 v Billericay TownBillericay Town 0-1 Lowestoft Town | Ryman League Premier Division |
| 5 | Sat 27 Aug 2016 | 40-1 v Havant & WaterloovilleHavant & Waterlooville 1-0 Lowestoft Town | Ryman League Premier Division |
| 6 | Mon 29 Aug 2016 | 42-2 v AFC SudburyLowestoft Town 2-2 AFC Sudbury | Ryman League Premier Division |
| 7 | Sat 24 Sep 2016 | 41-1 v Wingate & FinchleyWingate & Finchley 1-1 Lowestoft Town | Ryman League Premier Division |
| 8 | Wed 28 Sep 2016 | 43-0 v Grays AthleticGrays Athletic 0-3 Lowestoft Town | Ryman League Premier Division |
| 9 | Sat 1 Oct 2016 | 44-0 v Harlow TownLowestoft Town 4-0 Harlow Town | Ryman League Premier Division |
| 10 | Tue 4 Oct 2016 | 40-3 v Dulwich HamletLowestoft Town 0-3 Dulwich Hamlet | Ryman League Premier Division |
| 11 | Sat 8 Oct 2016 | 43-3 v HendonLowestoft Town 3-3 Hendon | Ryman League Premier Division |
| 12 | Tue 11 Oct 2016 | 40-2 v Needham MarketNeedham Market 2-0 Lowestoft Town | Ryman League Premier Division |
| 13 | Sat 15 Oct 2016 | 42-2 v Metropolitan PoliceMetropolitan Police 2-2 Lowestoft Town | Ryman League Premier Division |
| 14 | Sat 29 Oct 2016 | 151-2 v Dulwich HamletLowestoft Town 1-2 Dulwich Hamlet | FA Trophy First Qualifying Round |
| 15 | Tue 1 Nov 2016 | 41-1 v Billericay TownLowestoft Town 1-1 Billericay Town | Ryman League Premier Division |
| 16 | Sat 5 Nov 2016 | 41-3 v LeatherheadLeatherhead 3-1 Lowestoft Town | Ryman League Premier Division |
| 17 | Tue 8 Nov 2016 | 40-3 v Canvey IslandLowestoft Town 0-3 Canvey Island | Ryman League Premier Division |
| 18 | Sat 12 Nov 2016 | 42-1 v Grays AthleticLowestoft Town 2-1 Grays Athletic | Ryman League Premier Division |
| 19 | Sat 19 Nov 2016 | 41-0 v Burgess Hill TownLowestoft Town 1-0 Burgess Hill Town | Ryman League Premier Division |
| 20 | Sat 26 Nov 2016 | 40-3 v Canvey IslandCanvey Island 3-0 Lowestoft Town | Ryman League Premier Division |
| 21 | Sat 3 Dec 2016 | 42-1 v Wingate & FinchleyLowestoft Town 2-1 Wingate & Finchley | Ryman League Premier Division |
| 22 | Sat 10 Dec 2016 | 45-2 v KingstonianKingstonian 2-5 Lowestoft Town | Ryman League Premier Division |
| 23 | Tue 13 Dec 2016 | 42-2 v Enfield TownEnfield Town 2-2 Lowestoft Town | Ryman League Premier Division |
| 24 | Sat 17 Dec 2016 | 40-4 v WorthingLowestoft Town 0-4 Worthing | Ryman League Premier Division |
| 25 | Mon 26 Dec 2016 | 43-2 v LeistonLowestoft Town 3-2 Leiston | Ryman League Premier Division |
| 26 | Sat 31 Dec 2016 | 42-4 v Harrow BoroughHarrow Borough 4-2 Lowestoft Town | Ryman League Premier Division |
| 27 | Sat 7 Jan 2017 | 140-2 v Havant & WaterloovilleLowestoft Town 0-2 Havant & Waterlooville | Ryman League Premier Division |
| 28 | Sat 4 Feb 2017 | 40-1 v Metropolitan PoliceLowestoft Town 0-1 Metropolitan Police | Ryman League Premier Division |
| 29 | Sat 11 Feb 2017 | 120-0 v HendonHendon 0-0 Lowestoft Town | Ryman League Premier Division |
| 30 | Sat 18 Feb 2017 | 41-0 v LeatherheadLowestoft Town 1-0 Leatherhead | Ryman League Premier Division |
| 31 | Sat 25 Feb 2017 | 42-1 v Enfield TownLowestoft Town 2-1 Enfield Town | Ryman League Premier Division |
| 32 | Sat 4 Mar 2017 | 43-1 v Burgess Hill TownBurgess Hill Town 1-3 Lowestoft Town | Ryman League Premier Division |
| 33 | Sat 11 Mar 2017 | 41-0 v KingstonianLowestoft Town 1-0 Kingstonian | Ryman League Premier Division |
| 34 | Sat 18 Mar 2017 | 41-0 v WorthingWorthing 0-1 Lowestoft Town | Ryman League Premier Division |
| 35 | Sat 25 Mar 2017 | 42-2 v Folkestone InvictaLowestoft Town 2-2 Folkestone Invicta | Ryman League Premier Division |
| 36 | Sat 1 Apr 2017 | 40-1 v MersthamMerstham 1-0 Lowestoft Town | Ryman League Premier Division |
| 37 | Sat 8 Apr 2017 | 41-3 v Dulwich HamletDulwich Hamlet 3-1 Lowestoft Town | Ryman League Premier Division |
| 38 | Thu 13 Apr 2017 | 41-5 v MersthamLowestoft Town 1-5 Merstham | Ryman League Premier Division |
| 39 | Mon 17 Apr 2017 | 42-1 v LeistonLeiston 1-2 Lowestoft Town | Ryman League Premier Division |
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