| 1 | Sat 22 Oct 2016 | 0-0 v EastleighLincoln City 0-0 Eastleigh | National League |
| 2 | Tue 25 Oct 2016 | 42-0 v Boreham WoodLincoln City 2-0 Boreham Wood | National League |
| 3 | Sat 29 Oct 2016 | 5-2 v ChesterChester 2-5 Lincoln City | National League |
| 4 | Sat 19 Nov 2016 | 3-2 v Forest Green RoversForest Green Rovers 2-3 Lincoln City | National League |
| 5 | Tue 22 Nov 2016 | 4-1 v York CityYork City 1-4 Lincoln City | National League |
| 6 | Sat 26 Nov 2016 | 2-0 v Maidstone UnitedLincoln City 2-0 Maidstone United | National League |
| 7 | Tue 29 Nov 2016 | 1-0 v WrexhamLincoln City 1-0 Wrexham | National League |
| 8 | Sat 17 Dec 2016 | 2-1 v Tranmere RoversLincoln City 2-1 Tranmere Rovers | National League |
| 9 | Mon 26 Dec 2016 | 1-2 v GuiseleyGuiseley 2-1 Lincoln City | National League |
| 10 | Fri 20 Jan 2017 | 42-0 v Dover AthleticLincoln City 2-0 Dover Athletic | National League |
| 11 | Tue 24 Jan 2017 | 100-3 v BarrowBarrow 3-0 Lincoln City | National League |
| 12 | Tue 31 Jan 2017 | 41-0 v Solihull MoorsSolihull Moors 0-1 Lincoln City | National League |
| 13 | Sat 11 Feb 2017 | 43-2 v WokingLincoln City 3-2 Woking | National League |
| 14 | Tue 21 Feb 2017 | 41-0 v North Ferriby UnitedNorth Ferriby United 0-1 Lincoln City | National League |
| 15 | Tue 7 Mar 2017 | 44-0 v Braintree TownBraintree Town 0-4 Lincoln City | National League |
| 16 | Tue 14 Mar 2017 | 41-2 v York CityYork City 2-1 Lincoln City | FA Trophy Semi Final |
| 17 | Tue 28 Mar 2017 | 41-1 v Sutton UnitedSutton United 1-1 Lincoln City | National League |
| 18 | Sat 1 Apr 2017 | 41-0 v BromleyLincoln City 1-0 Bromley | National League |
| 19 | Mon 3 Apr 2017 | 42-0 v Dagenham & RedbridgeLincoln City 2-0 Dagenham & Redbridge | National League |
| 20 | Sat 8 Apr 2017 | 41-0 v EastleighEastleigh 0-1 Lincoln City | National League |
| 21 | Tue 11 Apr 2017 | 41-0 v ChesterLincoln City 1-0 Chester | National League |
| 22 | Fri 14 Apr 2017 | 42-1 v Torquay UnitedLincoln City 2-1 Torquay United | National League |
| 23 | Mon 17 Apr 2017 | 42-1 v GatesheadGateshead 1-2 Lincoln City | National League |
| 24 | Sat 22 Apr 2017 | 42-1 v Macclesfield TownLincoln City 2-1 Macclesfield Town | National League |
| 25 | Tue 25 Apr 2017 | 40-0 v Maidstone UnitedMaidstone United 0-0 Lincoln City | National League |
| 26 | Sat 29 Apr 2017 | 41-1 v SouthportSouthport 1-1 Lincoln City | National League |
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