| 1 | Sat 6 Aug 2016 | 23-1 v WokingWoking 1-3 Lincoln City | National League |
| 2 | Tue 9 Aug 2016 | 26-1 v North Ferriby UnitedLincoln City 6-1 North Ferriby United | National League |
| 3 | Sat 13 Aug 2016 | 21-3 v Sutton UnitedLincoln City 1-3 Sutton United | National League |
| 4 | Mon 29 Aug 2016 | 23-0 v GatesheadLincoln City 3-0 Gateshead | National League |
| 5 | Sat 3 Sep 2016 | 22-1 v Torquay UnitedTorquay United 1-2 Lincoln City | National League |
| 6 | Sat 10 Sep 2016 | 21-0 v Tranmere RoversTranmere Rovers 0-1 Lincoln City | National League |
| 7 | Tue 13 Sep 2016 | 20-0 v Solihull MoorsLincoln City 0-0 Solihull Moors | National League |
| 8 | Sat 17 Sep 2016 | 21-2 v BarrowLincoln City 1-2 Barrow | National League |
| 9 | Sat 24 Sep 2016 | 20-2 v Dover AthleticDover Athletic 2-0 Lincoln City | National League |
| 10 | Sat 1 Oct 2016 | 23-0 v Braintree TownLincoln City 3-0 Braintree Town | National League |
| 11 | Tue 4 Oct 2016 | 22-1 v WrexhamWrexham 1-2 Lincoln City | National League |
| 12 | Sat 8 Oct 2016 | 21-1 v BromleyBromley 1-1 Lincoln City | National League |
| 13 | Sat 22 Oct 2016 | 20-0 v EastleighLincoln City 0-0 Eastleigh | National League |
| 14 | Tue 25 Oct 2016 | 22-0 v Boreham WoodLincoln City 2-0 Boreham Wood | National League |
| 15 | Sat 29 Oct 2016 | 25-2 v ChesterChester 2-5 Lincoln City | National League |
| 16 | Sat 5 Nov 2016 | 22-1 v AltrinchamLincoln City 2-1 Altrincham | Emirates FA Cup First Round |
| 17 | Sat 12 Nov 2016 | 23-3 v Aldershot TownLincoln City 3-3 Aldershot Town | National League |
| 18 | Sat 19 Nov 2016 | 23-2 v Forest Green RoversForest Green Rovers 2-3 Lincoln City | National League |
| 19 | Tue 22 Nov 2016 | 24-1 v York CityYork City 1-4 Lincoln City | National League |
| 20 | Sat 26 Nov 2016 | 22-0 v Maidstone UnitedLincoln City 2-0 Maidstone United | National League |
| 21 | Tue 29 Nov 2016 | 21-0 v WrexhamLincoln City 1-0 Wrexham | National League |
| 22 | Mon 5 Dec 2016 | 23-2 v Oldham AthleticLincoln City 3-2 Oldham Athletic | Emirates FA Cup Second Round |
| 23 | Sat 17 Dec 2016 | 22-1 v Tranmere RoversLincoln City 2-1 Tranmere Rovers | National League |
| 24 | Mon 26 Dec 2016 | 21-2 v GuiseleyGuiseley 2-1 Lincoln City | National League |
| 25 | Sun 1 Jan 2017 | 23-1 v GuiseleyLincoln City 3-1 Guiseley | National League |
| 26 | Sat 7 Jan 2017 | 22-2 v Ipswich TownIpswich Town 2-2 Lincoln City | Emirates FA Cup Third Round |
| 27 | Tue 17 Jan 2017 | 21-0 v Ipswich TownLincoln City 1-0 Ipswich Town | Emirates FA Cup Third Round Replay |
| 28 | Fri 20 Jan 2017 | 22-0 v Dover AthleticLincoln City 2-0 Dover Athletic | National League |
| 29 | Tue 24 Jan 2017 | 20-3 v BarrowBarrow 3-0 Lincoln City | National League |
| 30 | Sat 28 Jan 2017 | 23-1 v Brighton & Hove AlbionLincoln City 3-1 Brighton & Hove Albion | Emirates FA Cup Fourth Round |
| 31 | Tue 31 Jan 2017 | 21-0 v Solihull MoorsSolihull Moors 0-1 Lincoln City | National League |
| 32 | Sat 11 Feb 2017 | 23-2 v WokingLincoln City 3-2 Woking | National League |
| 33 | Sat 18 Feb 2017 | 21-0 v BurnleyBurnley 0-1 Lincoln City | Emirates FA Cup Fifth Round |
| 34 | Tue 28 Feb 2017 | 21-1 v York CityLincoln City 1-1 York City | National League |
| 35 | Sat 4 Mar 2017 | 20-0 v Aldershot TownAldershot Town 0-0 Lincoln City | National League |
| 36 | Tue 7 Mar 2017 | 24-0 v Braintree TownBraintree Town 0-4 Lincoln City | National League |
| 37 | Sat 11 Mar 2017 | 20-5 v ArsenalArsenal 5-0 Lincoln City | Emirates FA Cup Quarter Final |
| 38 | Tue 14 Mar 2017 | 21-2 v York CityYork City 2-1 Lincoln City | FA Trophy Semi Final |
| 39 | Mon 3 Apr 2017 | 22-0 v Dagenham & RedbridgeLincoln City 2-0 Dagenham & Redbridge | National League |
| 40 | Sat 8 Apr 2017 | 21-0 v EastleighEastleigh 0-1 Lincoln City | National League |
| 41 | Tue 11 Apr 2017 | 21-0 v ChesterLincoln City 1-0 Chester | National League |
| 42 | Sat 22 Apr 2017 | 22-1 v Macclesfield TownLincoln City 2-1 Macclesfield Town | National League |
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