| 1 | Wed 29 Aug 2012 | 20-5 v EvertonEverton 5-0 Leyton Orient | Capital One Cup Second Round |
| 2 | Sat 1 Sep 2012 | 20-1 v Crawley TownCrawley Town 1-0 Leyton Orient | npower League One |
| 3 | Sat 8 Sep 2012 | 21-0 v Swindon TownSwindon Town 0-1 Leyton Orient | npower League One |
| 4 | Thu 13 Sep 2012 | 21-0 v BrentfordLeyton Orient 1-0 Brentford | npower League One |
| 5 | Tue 18 Sep 2012 | 24-1 v Yeovil TownLeyton Orient 4-1 Yeovil Town | npower League One |
| 6 | Sat 22 Sep 2012 | 21-1 v Crewe AlexandraCrewe Alexandra 1-1 Leyton Orient | npower League One |
| 7 | Sat 29 Sep 2012 | 20-2 v Doncaster RoversLeyton Orient 0-2 Doncaster Rovers | npower League One |
| 8 | Tue 2 Oct 2012 | 22-1 v WalsallWalsall 1-2 Leyton Orient | npower League One |
| 9 | Sat 6 Oct 2012 | 20-1 v Sheffield UnitedLeyton Orient 0-1 Sheffield United | npower League One |
| 10 | Tue 9 Oct 2012 | 21-0 v BarnetLeyton Orient 1-0 Barnet | Johnstone's Paint Trophy Second Round |
| 11 | Tue 16 Oct 2012 | 21-0 v Hartlepool UnitedLeyton Orient 1-0 Hartlepool United | npower League One |
| 12 | Sat 20 Oct 2012 | 20-2 v Oldham AthleticOldham Athletic 2-0 Leyton Orient | npower League One |
| 13 | Tue 23 Oct 2012 | 20-2 v Colchester UnitedLeyton Orient 0-2 Colchester United | npower League One |
| 14 | Wed 14 Nov 2012 | 22-0 v Gloucester CityGloucester City 0-2 Leyton Orient | FA Cup with Budweiser First Round |
| 15 | Wed 5 Dec 2012 | 23-0 v Northampton TownNorthampton Town 0-3 Leyton Orient | Johnstone's Paint Trophy Southern Area Quarter Final |
| 16 | Sat 15 Dec 2012 | 21-3 v Scunthorpe UnitedLeyton Orient 1-3 Scunthorpe United | npower League One |
| 17 | Sat 29 Dec 2012 | 22-1 v WalsallLeyton Orient 2-1 Walsall | npower League One |
| 18 | Tue 1 Jan 2013 | 20-3 v Yeovil TownYeovil Town 3-0 Leyton Orient | npower League One |
| 19 | Sat 5 Jan 2013 | 21-1 v Hull CityHull City 1-1 Leyton Orient | FA Cup with Budweiser Third Round |
| 20 | Sat 12 Jan 2013 | 21-1 v Crewe AlexandraLeyton Orient 1-1 Crewe Alexandra | npower League One |
| 21 | Tue 15 Jan 2013 | 21-2 v Hull CityLeyton Orient 1-2 Hull City | FA Cup with Budweiser Third Round Replay |
| 22 | Sat 19 Jan 2013 | 20-2 v Doncaster RoversDoncaster Rovers 2-0 Leyton Orient | npower League One |
| 23 | Sat 2 Feb 2013 | 21-0 v StevenageStevenage 0-1 Leyton Orient | npower League One |
| 24 | Wed 20 Feb 2013 | 22-2 v Southend UnitedSouthend United 2-2 Leyton Orient | Johnstone's Paint Trophy Southern Area Final |
| 25 | Sat 23 Feb 2013 | 20-1 v Crawley TownLeyton Orient 0-1 Crawley Town | npower League One |
| 26 | Tue 26 Feb 2013 | 20-0 v Sheffield UnitedSheffield United 0-0 Leyton Orient | npower League One |
| 27 | Sat 2 Mar 2013 | 23-1 v BournemouthLeyton Orient 3-1 Bournemouth | npower League One |
| 28 | Wed 6 Mar 2013 | 21-1 v Notts CountyNotts County 1-1 Leyton Orient | npower League One |
| 29 | Sat 9 Mar 2013 | 22-0 v Shrewsbury TownShrewsbury Town 0-2 Leyton Orient | npower League One |
| 30 | Tue 12 Mar 2013 | 21-0 v PortsmouthLeyton Orient 1-0 Portsmouth | npower League One |
| 31 | Sat 16 Mar 2013 | 24-1 v Carlisle UnitedLeyton Orient 4-1 Carlisle United | npower League One |
| 32 | Sat 23 Mar 2013 | 20-0 v Preston North EndPreston North End 0-0 Leyton Orient | npower League One |
| 33 | Fri 29 Mar 2013 | 21-2 v Scunthorpe UnitedScunthorpe United 2-1 Leyton Orient | npower League One |
| 34 | Mon 1 Apr 2013 | 22-0 v BuryLeyton Orient 2-0 Bury | npower League One |
| 35 | Sat 6 Apr 2013 | 21-2 v Colchester UnitedColchester United 2-1 Leyton Orient | npower League One |
| 36 | Sat 13 Apr 2013 | 22-0 v Milton Keynes DonsLeyton Orient 2-0 Milton Keynes Dons | npower League One |
| 37 | Sat 20 Apr 2013 | 21-0 v Coventry CityCoventry City 0-1 Leyton Orient | npower League One |
| 38 | Sat 27 Apr 2013 | 21-1 v Oldham AthleticLeyton Orient 1-1 Oldham Athletic | npower League One |
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