| 1 | Sat 18 Aug 2012 | 41-3 v Tranmere RoversTranmere Rovers 3-1 Leyton Orient | npower League One |
| 2 | Tue 21 Aug 2012 | 40-1 v StevenageLeyton Orient 0-1 Stevenage | npower League One |
| 3 | Wed 29 Aug 2012 | 40-5 v EvertonEverton 5-0 Leyton Orient | Capital One Cup Second Round |
| 4 | Sat 1 Sep 2012 | 40-1 v Crawley TownCrawley Town 1-0 Leyton Orient | npower League One |
| 5 | Sat 8 Sep 2012 | 41-0 v Swindon TownSwindon Town 0-1 Leyton Orient | npower League One |
| 6 | Thu 13 Sep 2012 | 41-0 v BrentfordLeyton Orient 1-0 Brentford | npower League One |
| 7 | Tue 18 Sep 2012 | 44-1 v Yeovil TownLeyton Orient 4-1 Yeovil Town | npower League One |
| 8 | Sat 22 Sep 2012 | 41-1 v Crewe AlexandraCrewe Alexandra 1-1 Leyton Orient | npower League One |
| 9 | Sat 29 Sep 2012 | 40-2 v Doncaster RoversLeyton Orient 0-2 Doncaster Rovers | npower League One |
| 10 | Tue 2 Oct 2012 | 42-1 v WalsallWalsall 1-2 Leyton Orient | npower League One |
| 11 | Sat 6 Oct 2012 | 40-1 v Sheffield UnitedLeyton Orient 0-1 Sheffield United | npower League One |
| 12 | Tue 16 Oct 2012 | 41-0 v Hartlepool UnitedLeyton Orient 1-0 Hartlepool United | npower League One |
| 13 | Sat 20 Oct 2012 | 40-2 v Oldham AthleticOldham Athletic 2-0 Leyton Orient | npower League One |
| 14 | Tue 23 Oct 2012 | 40-2 v Colchester UnitedLeyton Orient 0-2 Colchester United | npower League One |
| 15 | Sat 27 Oct 2012 | 40-1 v Coventry CityLeyton Orient 0-1 Coventry City | npower League One |
| 16 | Wed 7 Nov 2012 | 40-1 v Milton Keynes DonsMilton Keynes Dons 1-0 Leyton Orient | npower League One |
| 17 | Sat 10 Nov 2012 | 42-1 v Shrewsbury TownLeyton Orient 2-1 Shrewsbury Town | npower League One |
| 18 | Sat 17 Nov 2012 | 44-1 v Carlisle UnitedCarlisle United 1-4 Leyton Orient | npower League One |
| 19 | Tue 20 Nov 2012 | 43-2 v PortsmouthPortsmouth 2-3 Leyton Orient | npower League One |
| 20 | Sat 24 Nov 2012 | 42-0 v Preston North EndLeyton Orient 2-0 Preston North End | npower League One |
| 21 | Sun 2 Dec 2012 | 44-2 v Alfreton TownAlfreton Town 2-4 Leyton Orient | FA Cup with Budweiser Second Round |
| 22 | Sat 8 Dec 2012 | 42-0 v BuryBury 0-2 Leyton Orient | npower League One |
| 23 | Sat 15 Dec 2012 | 41-3 v Scunthorpe UnitedLeyton Orient 1-3 Scunthorpe United | npower League One |
| 24 | Sat 29 Dec 2012 | 42-1 v WalsallLeyton Orient 2-1 Walsall | npower League One |
| 25 | Tue 1 Jan 2013 | 40-3 v Yeovil TownYeovil Town 3-0 Leyton Orient | npower League One |
| 26 | Sat 5 Jan 2013 | 41-1 v Hull CityHull City 1-1 Leyton Orient | FA Cup with Budweiser Third Round |
| 27 | Tue 8 Jan 2013 | 41-0 v Yeovil TownLeyton Orient 1-0 Yeovil Town | Johnstone's Paint Trophy Southern Area Semi Final |
| 28 | Tue 15 Jan 2013 | 41-2 v Hull CityLeyton Orient 1-2 Hull City | FA Cup with Budweiser Third Round Replay |
| 29 | Sat 19 Jan 2013 | 40-2 v Doncaster RoversDoncaster Rovers 2-0 Leyton Orient | npower League One |
| 30 | Tue 22 Jan 2013 | 42-2 v BrentfordBrentford 2-2 Leyton Orient | npower League One |
| 31 | Sat 26 Jan 2013 | 42-1 v Notts CountyLeyton Orient 2-1 Notts County | npower League One |
| 32 | Tue 29 Jan 2013 | 40-0 v Swindon TownLeyton Orient 0-0 Swindon Town | npower League One |
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