| 1 | Sat 2 Aug | 301-1 v Tranmere RoversColchester United 1-1 Tranmere Rovers |
| 2 | Sat 9 Aug | 301-1 v Oldham AthleticOldham Athletic 1-1 Colchester United |
| 3 | Sat 16 Aug | 302-0 v Shrewsbury TownShrewsbury Town 0-2 Colchester United |
| 4 | Tue 19 Aug | 301-2 v Cambridge UnitedColchester United 1-2 Cambridge United |
| 5 | Sat 23 Aug | 300-2 v BarrowColchester United 0-2 Barrow |
| 6 | Sat 20 Sep | 301-1 v Bristol RoversColchester United 1-1 Bristol Rovers |
| 7 | Sat 27 Sep | 302-4 v Fleetwood TownFleetwood Town 4-2 Colchester United |
| 8 | Sat 4 Oct | 30 6-2 v ChesterfieldColchester United 6-2 Chesterfield |
| 9 | Sat 11 Oct | 302-1 v Grimsby TownGrimsby Town 1-2 Colchester United |
| 10 | Sat 18 Oct | 303-1 v Harrogate TownColchester United 3-1 Harrogate Town |
| 11 | Sat 8 Nov | 300-2 v BromleyColchester United 0-2 Bromley |
| 12 | Sat 15 Nov | 302-0 v WalsallWalsall 0-2 Colchester United |
| 13 | Sat 22 Nov | 30 3-1 v Notts CountyNotts County 1-3 Colchester United |
| 14 | Sat 29 Nov | 302-0 v Cheltenham TownColchester United 2-0 Cheltenham Town |
| 15 | Sat 6 Dec | 300-0 v GillinghamColchester United 0-0 Gillingham |
| 16 | Sat 13 Dec | 303-4 v Salford CitySalford City 4-3 Colchester United |
| 17 | Sat 20 Dec | 304-1 v Newport CountyColchester United 4-1 Newport County |
| 18 | Fri 26 Dec | 301-1 v Crawley TownCrawley Town 1-1 Colchester United |
| 19 | Thu 1 Jan | 301-0 v Milton Keynes DonsColchester United 1-0 Milton Keynes Dons |
| 20 | Sat 17 Jan | 301-0 v Bristol RoversBristol Rovers 0-1 Colchester United |
| 21 | Sat 24 Jan | 302-1 v Fleetwood TownColchester United 2-1 Fleetwood Town |
| 22 | Tue 27 Jan | 300-1 v Grimsby TownColchester United 0-1 Grimsby Town |
| 23 | Sat 7 Feb | 30 2-0 v Shrewsbury TownColchester United 2-0 Shrewsbury Town |
| 24 | Sat 14 Feb | 30 0-1 v BarrowBarrow 1-0 Colchester United |
| 25 | Tue 17 Feb | 301-1 v Cambridge UnitedCambridge United 1-1 Colchester United |
| 26 | Sat 21 Feb | 304-1 v BarnetColchester United 4-1 Barnet |
| 27 | Tue 3 Mar | 300-3 v ChesterfieldChesterfield 3-0 Colchester United |
| 28 | Sat 7 Mar | 302-1 v Newport CountyNewport County 1-2 Colchester United |
| 29 | Fri 13 Mar | 300-0 v Crawley TownColchester United 0-0 Crawley Town |
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