| 1 | Wed 13 Jul 2016 | 20-5 v PortsmouthHavant & Waterlooville 0-5 Portsmouth | Friendly |
| 2 | Tue 26 Jul 2016 | 25-1 v Petersfield TownPetersfield Town 1-5 Havant & Waterlooville | Friendly |
| 3 | Mon 1 Aug 2016 | 24-0 v AFC TottonHavant & Waterlooville 4-0 AFC Totton | Friendly |
| 4 | Sat 13 Aug 2016 | 21-3 v LeistonLeiston 3-1 Havant & Waterlooville | Ryman League Premier Division |
| 5 | Tue 16 Aug 2016 | 23-1 v LeatherheadHavant & Waterlooville 3-1 Leatherhead | Ryman League Premier Division |
| 6 | Sat 20 Aug 2016 | 21-0 v Folkestone InvictaHavant & Waterlooville 1-0 Folkestone Invicta | Ryman League Premier Division |
| 7 | Sat 27 Aug 2016 | 21-0 v Lowestoft TownHavant & Waterlooville 1-0 Lowestoft Town | Ryman League Premier Division |
| 8 | Mon 29 Aug 2016 | 22-0 v Wingate & FinchleyWingate & Finchley 0-2 Havant & Waterlooville | Ryman League Premier Division |
| 9 | Sat 3 Sep 2016 | 22-0 v SholingSholing 0-2 Havant & Waterlooville | Emirates FA Cup First Qualifying Round |
| 10 | Sat 10 Sep 2016 | 24-0 v Canvey IslandHavant & Waterlooville 4-0 Canvey Island | Ryman League Premier Division |
| 11 | Sat 17 Sep 2016 | 25-1 v Highworth TownHavant & Waterlooville 5-1 Highworth Town | Emirates FA Cup Second Qualifying Round |
| 12 | Sat 24 Sep 2016 | 21-1 v Staines TownHavant & Waterlooville 1-1 Staines Town | Ryman League Premier Division |
| 13 | Tue 27 Sep 2016 | 23-2 v WorthingHavant & Waterlooville 3-2 Worthing | Ryman League Premier Division |
| 14 | Sat 1 Oct 2016 | 20-7 v Ebbsfleet UnitedEbbsfleet United 7-0 Havant & Waterlooville | Emirates FA Cup Third Qualifying Round |
| 15 | Tue 4 Oct 2016 | 23-3 v Burgess Hill TownBurgess Hill Town 3-3 Havant & Waterlooville | Ryman League Premier Division |
| 16 | Sat 8 Oct 2016 | 25-2 v Harlow TownHavant & Waterlooville 5-2 Harlow Town | Ryman League Premier Division |
| 17 | Wed 12 Oct 2016 | 21-0 v LeatherheadLeatherhead 0-1 Havant & Waterlooville | Ryman League Premier Division |
| 18 | Tue 18 Oct 2016 | 21-2 v Metropolitan PoliceHavant & Waterlooville 1-2 Metropolitan Police | Ryman League Premier Division |
| 19 | Sat 22 Oct 2016 | 20-0 v LeistonHavant & Waterlooville 0-0 Leiston | Ryman League Premier Division |
| 20 | Sat 29 Oct 2016 | 22-1 v Cirencester TownCirencester Town 1-2 Havant & Waterlooville | FA Trophy First Qualifying Round |
| 21 | Sat 5 Nov 2016 | 21-1 v HendonHendon 1-1 Havant & Waterlooville | Ryman League Premier Division |
| 22 | Sat 12 Nov 2016 | 25-0 v Billericay TownHavant & Waterlooville 5-0 Billericay Town | FA Trophy Second Qualifying Round |
| 23 | Tue 15 Nov 2016 | 22-0 v Billericay TownBillericay Town 0-2 Havant & Waterlooville | Ryman League Premier Division |
| 24 | Tue 22 Nov 2016 | 182-1 v WorthingWorthing 1-2 Havant & Waterlooville | Ryman League Premier Division |
| 25 | Sat 26 Nov 2016 | 21-3 v Harlow TownHavant & Waterlooville 1-3 Harlow Town | FA Trophy Third Qualifying Round |
| 26 | Sat 3 Dec 2016 | 24-1 v Staines TownStaines Town 1-4 Havant & Waterlooville | Ryman League Premier Division |
| 27 | Sat 17 Dec 2016 | 25-0 v Grays AthleticHavant & Waterlooville 5-0 Grays Athletic | Ryman League Premier Division |
| 28 | Mon 26 Dec 2016 | 21-1 v Bognor Regis TownBognor Regis Town 1-1 Havant & Waterlooville | Ryman League Premier Division |
| 29 | Sat 31 Dec 2016 | 21-1 v KingstonianHavant & Waterlooville 1-1 Kingstonian | Ryman League Premier Division |
| 30 | Mon 2 Jan 2017 | 21-1 v Wingate & FinchleyHavant & Waterlooville 1-1 Wingate & Finchley | Ryman League Premier Division |
| 31 | Sat 4 Feb 2017 | 171-2 v Billericay TownHavant & Waterlooville 1-2 Billericay Town | Ryman League Premier Division |
| 32 | Sat 11 Feb 2017 | 22-0 v Harlow TownHarlow Town 0-2 Havant & Waterlooville | Ryman League Premier Division |
| 33 | Sat 18 Feb 2017 | 23-2 v HendonHavant & Waterlooville 3-2 Hendon | Ryman League Premier Division |
| 34 | Sat 25 Feb 2017 | 23-0 v MersthamHavant & Waterlooville 3-0 Merstham | Ryman League Premier Division |
| 35 | Tue 28 Feb 2017 | 21-1 v Tonbridge AngelsTonbridge Angels 1-1 Havant & Waterlooville | Ryman League Premier Division |
| 36 | Sat 25 Mar 2017 | 20-0 v Needham MarketNeedham Market 0-0 Havant & Waterlooville | Ryman League Premier Division |
| 37 | Tue 28 Mar 2017 | 23-1 v Harrow BoroughHavant & Waterlooville 3-1 Harrow Borough | Ryman League Premier Division |
| 38 | Sat 1 Apr 2017 | 22-1 v Dulwich HamletHavant & Waterlooville 2-1 Dulwich Hamlet | Ryman League Premier Division |
| 39 | Sat 8 Apr 2017 | 22-0 v Tonbridge AngelsHavant & Waterlooville 2-0 Tonbridge Angels | Ryman League Premier Division |
| 40 | Fri 14 Apr 2017 | 22-1 v Canvey IslandCanvey Island 1-2 Havant & Waterlooville | Ryman League Premier Division |
| 41 | Mon 17 Apr 2017 | 21-0 v Bognor Regis TownHavant & Waterlooville 1-0 Bognor Regis Town | Ryman League Premier Division |
| 42 | Sat 22 Apr 2017 | 20-0 v KingstonianKingstonian 0-0 Havant & Waterlooville | Ryman League Premier Division |
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