| 1 | Sat 15 Sep 2012 | 1-1 v Sutton UnitedSutton United 1-1 Havant & Waterlooville | Blue Square Bet South |
| 2 | Tue 25 Sep 2012 | 0-3 v Weston-super-MareHavant & Waterlooville 0-3 Weston-super-Mare | Blue Square Bet South |
| 3 | Sat 29 Sep 2012 | 1-1 v BromleyBromley 1-1 Havant & Waterlooville | Blue Square Bet South |
| 4 | Sat 6 Oct 2012 | 2-2 v AFC HornchurchAFC Hornchurch 2-2 Havant & Waterlooville | Blue Square Bet South |
| 5 | Sat 13 Oct 2012 | 2-1 v Basingstoke TownBasingstoke Town 1-2 Havant & Waterlooville | Blue Square Bet South |
| 6 | Sat 20 Oct 2012 | 0-1 v FarnboroughHavant & Waterlooville 0-1 Farnborough | Blue Square Bet South |
| 7 | Sat 27 Oct 2012 | 1-3 v Billericay TownBillericay Town 3-1 Havant & Waterlooville | Blue Square Bet South |
| 8 | Tue 1 Jan 2013 | 2-3 v Eastbourne BoroughHavant & Waterlooville 2-3 Eastbourne Borough | Blue Square Bet South |
| 9 | Sat 5 Jan 2013 | 5-2 v AFC HornchurchHavant & Waterlooville 5-2 AFC Hornchurch | Blue Square Bet South |
| 10 | Tue 8 Jan 2013 | 0-1 v Tonbridge AngelsTonbridge Angels 1-0 Havant & Waterlooville | Blue Square Bet South |
| 11 | Sat 26 Jan 2013 | 0-0 v Dorchester TownDorchester Town 0-0 Havant & Waterlooville | Blue Square Bet South |
| 12 | Sat 2 Feb 2013 | 4-1 v Basingstoke TownHavant & Waterlooville 4-1 Basingstoke Town | Blue Square Bet South |
| 13 | Sat 9 Feb 2013 | 1-1 v FarnboroughFarnborough 1-1 Havant & Waterlooville | Blue Square Bet South |
| 14 | Mon 18 Feb 2013 | 1-1 v Chelmsford CityChelmsford City 1-1 Havant & Waterlooville | Blue Square Bet South |
| 15 | Sat 23 Feb 2013 | 2-2 v Salisbury CityHavant & Waterlooville 2-2 Salisbury City | Blue Square Bet South |
| 16 | Tue 26 Feb 2013 | 2-2 v EastleighEastleigh 2-2 Havant & Waterlooville | Blue Square Bet South |
| 17 | Sat 2 Mar 2013 | 3-0 v Sutton UnitedHavant & Waterlooville 3-0 Sutton United | Blue Square Bet South |
| 18 | Tue 5 Mar 2013 | 2-1 v Bath CityHavant & Waterlooville 2-1 Bath City | Blue Square Bet South |
| 19 | Sat 9 Mar 2013 | 2-2 v Dover AthleticDover Athletic 2-2 Havant & Waterlooville | Blue Square Bet South |
| 20 | Tue 12 Mar 2013 | 5-0 v Billericay TownHavant & Waterlooville 5-0 Billericay Town | Blue Square Bet South |
| 21 | Tue 26 Mar 2013 | 2-1 v Maidenhead UnitedHavant & Waterlooville 2-1 Maidenhead United | Blue Square Bet South |
| 22 | Fri 29 Mar 2013 | 1-0 v Truro CityHavant & Waterlooville 1-0 Truro City | Blue Square Bet South |
| 23 | Mon 1 Apr 2013 | 4-1 v Hayes & Yeading UnitedHayes & Yeading United 1-4 Havant & Waterlooville | Blue Square Bet South |
| 24 | Sat 6 Apr 2013 | 0-2 v Maidenhead UnitedMaidenhead United 2-0 Havant & Waterlooville | Blue Square Bet South |
| 25 | Tue 9 Apr 2013 | 2-1 v Boreham WoodBoreham Wood 1-2 Havant & Waterlooville | Blue Square Bet South |
| 26 | Sat 20 Apr 2013 | 1-5 v Salisbury CitySalisbury City 5-1 Havant & Waterlooville | Blue Square Bet South |
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