| 1 | Sat 25 Aug 2012 | 0-2 v Bath CityBath City 2-0 Havant & Waterlooville | Blue Square Bet South |
| 2 | Mon 27 Aug 2012 | 0-3 v EastleighHavant & Waterlooville 0-3 Eastleigh | Blue Square Bet South |
| 3 | Sat 1 Sep 2012 | 1-1 v Staines TownStaines Town 1-1 Havant & Waterlooville | Blue Square Bet South |
| 4 | Tue 4 Sep 2012 | 2-1 v Hayes & Yeading UnitedHavant & Waterlooville 2-1 Hayes & Yeading United | Blue Square Bet South |
| 5 | Sat 8 Sep 2012 | 2-2 v Tonbridge AngelsHavant & Waterlooville 2-2 Tonbridge Angels | Blue Square Bet South |
| 6 | Sat 15 Sep 2012 | 1-1 v Sutton UnitedSutton United 1-1 Havant & Waterlooville | Blue Square Bet South |
| 7 | Sat 13 Oct 2012 | 2-1 v Basingstoke TownBasingstoke Town 1-2 Havant & Waterlooville | Blue Square Bet South |
| 8 | Sat 27 Oct 2012 | 1-3 v Billericay TownBillericay Town 3-1 Havant & Waterlooville | Blue Square Bet South |
| 9 | Tue 13 Nov 2012 | 4-0 v Dorchester TownHavant & Waterlooville 4-0 Dorchester Town | Blue Square Bet South |
| 10 | Sat 17 Nov 2012 | 2-2 v Weston-super-MareWeston-super-Mare 2-2 Havant & Waterlooville | Blue Square Bet South |
| 11 | Sat 1 Dec 2012 | 1-2 v BromleyHavant & Waterlooville 1-2 Bromley | Blue Square Bet South |
| 12 | Tue 8 Jan 2013 | 0-1 v Tonbridge AngelsTonbridge Angels 1-0 Havant & Waterlooville | Blue Square Bet South |
| 13 | Sat 2 Mar 2013 | 3-0 v Sutton UnitedHavant & Waterlooville 3-0 Sutton United | Blue Square Bet South |
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