| 1 | Mon 27 Aug 2012 | 1-1 v Gainsborough TrinityGainsborough Trinity 1-1 Harrogate Town | Blue Square Bet North |
| 2 | Sat 15 Sep 2012 | 1-3 v Oxford CityHarrogate Town 1-3 Oxford City | Blue Square Bet North |
| 3 | Sat 29 Sep 2012 | 2-2 v Worcester CityWorcester City 2-2 Harrogate Town | Blue Square Bet North |
| 4 | Sat 17 Nov 2012 | 153-1 v Vauxhall MotorsHarrogate Town 3-1 Vauxhall Motors | Blue Square Bet North |
| 5 | Sat 8 Dec 2012 | 122-1 v Colwyn BayColwyn Bay 1-2 Harrogate Town | Blue Square Bet North |
| 6 | Thu 13 Dec 2012 | 51-1 v Hastings UnitedHastings United 1-1 Harrogate Town | FA Cup with Budweiser Second Round Replay |
| 7 | Sat 15 Dec 2012 | 55-0 v Hinckley UnitedHarrogate Town 5-0 Hinckley United | Blue Square Bet North |
| 8 | Wed 19 Dec 2012 | 50-2 v ChesterChester 2-0 Harrogate Town | Blue Square Bet North |
| 9 | Sat 5 Jan 2013 | 50-3 v AltrinchamAltrincham 3-0 Harrogate Town | Blue Square Bet North |
| 10 | Tue 29 Jan 2013 | 56-1 v Corby TownHarrogate Town 6-1 Corby Town | Blue Square Bet North |
| 11 | Tue 5 Feb 2013 | 53-1 v WorkingtonHarrogate Town 3-1 Workington | Blue Square Bet North |
| 12 | Sat 23 Feb 2013 | 52-0 v Gloucester CityGloucester City 0-2 Harrogate Town | Blue Square Bet North |
| 13 | Tue 26 Feb 2013 | 54-2 v Boston UnitedHarrogate Town 4-2 Boston United | Blue Square Bet North |
| 14 | Sat 2 Mar 2013 | 52-0 v HistonHarrogate Town 2-0 Histon | Blue Square Bet North |
| 15 | Tue 5 Mar 2013 | 51-2 v Colwyn BayHarrogate Town 1-2 Colwyn Bay | Blue Square Bet North |
| 16 | Thu 7 Mar 2013 | 52-1 v FC Halifax TownFC Halifax Town 1-2 Harrogate Town | Blue Square Bet North |
| 17 | Sat 9 Mar 2013 | 1-3 v ChesterHarrogate Town 1-3 Chester | Blue Square Bet North |
| 18 | Mon 1 Apr 2013 | 0-0 v Gainsborough TrinityHarrogate Town 0-0 Gainsborough Trinity | Blue Square Bet North |
| 19 | Tue 16 Apr 2013 | 0-2 v Solihull MoorsSolihull Moors 2-0 Harrogate Town | Blue Square Bet North |
| 20 | Thu 18 Apr 2013 | 1-1 v FC Halifax TownHarrogate Town 1-1 FC Halifax Town | Blue Square Bet North |
| 21 | Sat 20 Apr 2013 | 0-0 v Stalybridge CelticHarrogate Town 0-0 Stalybridge Celtic | Blue Square Bet North |
| 22 | Tue 23 Apr 2013 | 1-2 v GuiseleyHarrogate Town 1-2 Guiseley | Blue Square Bet North |
| 23 | Sat 27 Apr 2013 | 1-0 v Vauxhall MotorsVauxhall Motors 0-1 Harrogate Town | Blue Square Bet North |
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