| 1 | Sat 3 Nov 2012 | 71-0 v Torquay UnitedTorquay United 0-1 Harrogate Town | FA Cup with Budweiser First Round |
| 2 | Sat 17 Nov 2012 | 73-1 v Vauxhall MotorsHarrogate Town 3-1 Vauxhall Motors | Blue Square Bet North |
| 3 | Tue 20 Nov 2012 | 70-1 v Stalybridge CelticStalybridge Celtic 1-0 Harrogate Town | Blue Square Bet North |
| 4 | Sat 1 Dec 2012 | 81-1 v Hastings UnitedHarrogate Town 1-1 Hastings United | FA Cup with Budweiser Second Round |
| 5 | Sat 8 Dec 2012 | 82-1 v Colwyn BayColwyn Bay 1-2 Harrogate Town | Blue Square Bet North |
| 6 | Thu 13 Dec 2012 | 81-1 v Hastings UnitedHastings United 1-1 Harrogate Town | FA Cup with Budweiser Second Round Replay |
| 7 | Wed 19 Dec 2012 | 80-2 v ChesterChester 2-0 Harrogate Town | Blue Square Bet North |
| 8 | Tue 1 Jan 2013 | 82-1 v WorkingtonWorkington 1-2 Harrogate Town | Blue Square Bet North |
| 9 | Tue 29 Jan 2013 | 86-1 v Corby TownHarrogate Town 6-1 Corby Town | Blue Square Bet North |
| 10 | Sat 9 Feb 2013 | 81-2 v Brackley TownBrackley Town 2-1 Harrogate Town | Blue Square Bet North |
| 11 | Tue 19 Feb 2013 | 81-1 v DroylsdenHarrogate Town 1-1 Droylsden | Blue Square Bet North |
| 12 | Thu 7 Mar 2013 | 82-1 v FC Halifax TownFC Halifax Town 1-2 Harrogate Town | Blue Square Bet North |
| 13 | Sat 9 Mar 2013 | 1-3 v ChesterHarrogate Town 1-3 Chester | Blue Square Bet North |
| 14 | Mon 1 Apr 2013 | 0-0 v Gainsborough TrinityHarrogate Town 0-0 Gainsborough Trinity | Blue Square Bet North |
| 15 | Sat 6 Apr 2013 | 2-4 v Solihull MoorsHarrogate Town 2-4 Solihull Moors | Blue Square Bet North |
| 16 | Tue 9 Apr 2013 | 1-0 v Gloucester CityHarrogate Town 1-0 Gloucester City | Blue Square Bet North |
| 17 | Tue 23 Apr 2013 | 1-2 v GuiseleyHarrogate Town 1-2 Guiseley | Blue Square Bet North |
| 18 | Sat 27 Apr 2013 | 1-0 v Vauxhall MotorsVauxhall Motors 0-1 Harrogate Town | Blue Square Bet North |
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