| 1 | Mon 27 Aug 2012 | 1-1 v Gainsborough TrinityGainsborough Trinity 1-1 Harrogate Town | Blue Square Bet North |
| 2 | Tue 4 Sep 2012 | 3-1 v DroylsdenDroylsden 1-3 Harrogate Town | Blue Square Bet North |
| 3 | Sat 8 Sep 2012 | 3-1 v HistonHiston 1-3 Harrogate Town | Blue Square Bet North |
| 4 | Sat 15 Sep 2012 | 1-3 v Oxford CityHarrogate Town 1-3 Oxford City | Blue Square Bet North |
| 5 | Tue 18 Sep 2012 | 0-2 v GuiseleyGuiseley 2-0 Harrogate Town | Blue Square Bet North |
| 6 | Sat 17 Nov 2012 | 3-1 v Vauxhall MotorsHarrogate Town 3-1 Vauxhall Motors | Blue Square Bet North |
| 7 | Tue 20 Nov 2012 | 0-1 v Stalybridge CelticStalybridge Celtic 1-0 Harrogate Town | Blue Square Bet North |
| 8 | Sat 1 Dec 2012 | 141-1 v Hastings UnitedHarrogate Town 1-1 Hastings United | FA Cup with Budweiser Second Round |
| 9 | Thu 13 Dec 2012 | 151-1 v Hastings UnitedHastings United 1-1 Harrogate Town | FA Cup with Budweiser Second Round Replay |
| 10 | Sat 15 Dec 2012 | 155-0 v Hinckley UnitedHarrogate Town 5-0 Hinckley United | Blue Square Bet North |
| 11 | Tue 1 Jan 2013 | 152-1 v WorkingtonWorkington 1-2 Harrogate Town | Blue Square Bet North |
| 12 | Sat 5 Jan 2013 | 150-3 v AltrinchamAltrincham 3-0 Harrogate Town | Blue Square Bet North |
| 13 | Tue 8 Jan 2013 | 152-1 v Boston UnitedBoston United 1-2 Harrogate Town | Blue Square Bet North |
| 14 | Sat 9 Feb 2013 | 151-2 v Brackley TownBrackley Town 2-1 Harrogate Town | Blue Square Bet North |
| 15 | Sat 16 Feb 2013 | 153-1 v Worcester CityHarrogate Town 3-1 Worcester City | Blue Square Bet North |
| 16 | Tue 19 Feb 2013 | 151-1 v DroylsdenHarrogate Town 1-1 Droylsden | Blue Square Bet North |
| 17 | Sat 23 Feb 2013 | 152-0 v Gloucester CityGloucester City 0-2 Harrogate Town | Blue Square Bet North |
| 18 | Tue 26 Feb 2013 | 154-2 v Boston UnitedHarrogate Town 4-2 Boston United | Blue Square Bet North |
| 19 | Tue 5 Mar 2013 | 151-2 v Colwyn BayHarrogate Town 1-2 Colwyn Bay | Blue Square Bet North |
| 20 | Thu 7 Mar 2013 | 152-1 v FC Halifax TownFC Halifax Town 1-2 Harrogate Town | Blue Square Bet North |
| 21 | Sat 9 Mar 2013 | 1-3 v ChesterHarrogate Town 1-3 Chester | Blue Square Bet North |
| 22 | Tue 19 Mar 2013 | 2-0 v Bishop's StortfordBishop's Stortford 0-2 Harrogate Town | Blue Square Bet North |
| 23 | Mon 1 Apr 2013 | 0-0 v Gainsborough TrinityHarrogate Town 0-0 Gainsborough Trinity | Blue Square Bet North |
| 24 | Sat 13 Apr 2013 | 0-0 v Oxford CityOxford City 0-0 Harrogate Town | Blue Square Bet North |
| 25 | Thu 18 Apr 2013 | 1-1 v FC Halifax TownHarrogate Town 1-1 FC Halifax Town | Blue Square Bet North |
| 26 | Sat 20 Apr 2013 | 0-0 v Stalybridge CelticHarrogate Town 0-0 Stalybridge Celtic | Blue Square Bet North |
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