| 1 | Sat 3 Nov 2012 | 21-0 v Torquay UnitedTorquay United 0-1 Harrogate Town | FA Cup with Budweiser First Round |
| 2 | Sat 17 Nov 2012 | 23-1 v Vauxhall MotorsHarrogate Town 3-1 Vauxhall Motors | Blue Square Bet North |
| 3 | Tue 20 Nov 2012 | 20-1 v Stalybridge CelticStalybridge Celtic 1-0 Harrogate Town | Blue Square Bet North |
| 4 | Sat 1 Dec 2012 | 21-1 v Hastings UnitedHarrogate Town 1-1 Hastings United | FA Cup with Budweiser Second Round |
| 5 | Sat 8 Dec 2012 | 22-1 v Colwyn BayColwyn Bay 1-2 Harrogate Town | Blue Square Bet North |
| 6 | Thu 13 Dec 2012 | 21-1 v Hastings UnitedHastings United 1-1 Harrogate Town | FA Cup with Budweiser Second Round Replay |
| 7 | Sat 15 Dec 2012 | 25-0 v Hinckley UnitedHarrogate Town 5-0 Hinckley United | Blue Square Bet North |
| 8 | Wed 19 Dec 2012 | 20-2 v ChesterChester 2-0 Harrogate Town | Blue Square Bet North |
| 9 | Tue 1 Jan 2013 | 22-1 v WorkingtonWorkington 1-2 Harrogate Town | Blue Square Bet North |
| 10 | Sat 5 Jan 2013 | 20-3 v AltrinchamAltrincham 3-0 Harrogate Town | Blue Square Bet North |
| 11 | Tue 8 Jan 2013 | 22-1 v Boston UnitedBoston United 1-2 Harrogate Town | Blue Square Bet North |
| 12 | Sat 16 Feb 2013 | 23-1 v Worcester CityHarrogate Town 3-1 Worcester City | Blue Square Bet North |
| 13 | Sat 23 Feb 2013 | 22-0 v Gloucester CityGloucester City 0-2 Harrogate Town | Blue Square Bet North |
| 14 | Tue 26 Feb 2013 | 24-2 v Boston UnitedHarrogate Town 4-2 Boston United | Blue Square Bet North |
| 15 | Tue 5 Mar 2013 | 21-2 v Colwyn BayHarrogate Town 1-2 Colwyn Bay | Blue Square Bet North |
| 16 | Thu 7 Mar 2013 | 22-1 v FC Halifax TownFC Halifax Town 1-2 Harrogate Town | Blue Square Bet North |
| 17 | Sat 9 Mar 2013 | 1-3 v ChesterHarrogate Town 1-3 Chester | Blue Square Bet North |
| 18 | Tue 12 Mar 2013 | 2-2 v Bishop's StortfordHarrogate Town 2-2 Bishop's Stortford | Blue Square Bet North |
| 19 | Sat 16 Mar 2013 | 2-0 v Corby TownCorby Town 0-2 Harrogate Town | Blue Square Bet North |
| 20 | Tue 19 Mar 2013 | 2-0 v Bishop's StortfordBishop's Stortford 0-2 Harrogate Town | Blue Square Bet North |
| 21 | Mon 1 Apr 2013 | 0-0 v Gainsborough TrinityHarrogate Town 0-0 Gainsborough Trinity | Blue Square Bet North |
| 22 | Wed 3 Apr 2013 | 0-1 v Bradford Park AvenueBradford Park Avenue 1-0 Harrogate Town | Blue Square Bet North |
| 23 | Sat 6 Apr 2013 | 2-4 v Solihull MoorsHarrogate Town 2-4 Solihull Moors | Blue Square Bet North |
| 24 | Tue 9 Apr 2013 | 1-0 v Gloucester CityHarrogate Town 1-0 Gloucester City | Blue Square Bet North |
| 25 | Sat 13 Apr 2013 | 0-0 v Oxford CityOxford City 0-0 Harrogate Town | Blue Square Bet North |
| 26 | Tue 16 Apr 2013 | 0-2 v Solihull MoorsSolihull Moors 2-0 Harrogate Town | Blue Square Bet North |
| 27 | Sat 20 Apr 2013 | 0-0 v Stalybridge CelticHarrogate Town 0-0 Stalybridge Celtic | Blue Square Bet North |
| 28 | Tue 23 Apr 2013 | 1-2 v GuiseleyHarrogate Town 1-2 Guiseley | Blue Square Bet North |
| 29 | Sat 27 Apr 2013 | 1-0 v Vauxhall MotorsVauxhall Motors 0-1 Harrogate Town | Blue Square Bet North |
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