| 1 | Sat 3 Nov 2012 | 41-0 v Torquay UnitedTorquay United 0-1 Harrogate Town | FA Cup with Budweiser First Round |
| 2 | Sat 17 Nov 2012 | 43-1 v Vauxhall MotorsHarrogate Town 3-1 Vauxhall Motors | Blue Square Bet North |
| 3 | Tue 20 Nov 2012 | 40-1 v Stalybridge CelticStalybridge Celtic 1-0 Harrogate Town | Blue Square Bet North |
| 4 | Sat 1 Dec 2012 | 41-1 v Hastings UnitedHarrogate Town 1-1 Hastings United | FA Cup with Budweiser Second Round |
| 5 | Thu 13 Dec 2012 | 41-1 v Hastings UnitedHastings United 1-1 Harrogate Town | FA Cup with Budweiser Second Round Replay |
| 6 | Wed 19 Dec 2012 | 40-2 v ChesterChester 2-0 Harrogate Town | Blue Square Bet North |
| 7 | Tue 1 Jan 2013 | 42-1 v WorkingtonWorkington 1-2 Harrogate Town | Blue Square Bet North |
| 8 | Sat 5 Jan 2013 | 40-3 v AltrinchamAltrincham 3-0 Harrogate Town | Blue Square Bet North |
| 9 | Tue 29 Jan 2013 | 46-1 v Corby TownHarrogate Town 6-1 Corby Town | Blue Square Bet North |
| 10 | Tue 5 Feb 2013 | 43-1 v WorkingtonHarrogate Town 3-1 Workington | Blue Square Bet North |
| 11 | Sat 9 Feb 2013 | 41-2 v Brackley TownBrackley Town 2-1 Harrogate Town | Blue Square Bet North |
| 12 | Sat 16 Feb 2013 | 43-1 v Worcester CityHarrogate Town 3-1 Worcester City | Blue Square Bet North |
| 13 | Tue 19 Feb 2013 | 41-1 v DroylsdenHarrogate Town 1-1 Droylsden | Blue Square Bet North |
| 14 | Sat 23 Feb 2013 | 42-0 v Gloucester CityGloucester City 0-2 Harrogate Town | Blue Square Bet North |
| 15 | Tue 26 Feb 2013 | 44-2 v Boston UnitedHarrogate Town 4-2 Boston United | Blue Square Bet North |
| 16 | Sat 2 Mar 2013 | 42-0 v HistonHarrogate Town 2-0 Histon | Blue Square Bet North |
| 17 | Tue 5 Mar 2013 | 41-2 v Colwyn BayHarrogate Town 1-2 Colwyn Bay | Blue Square Bet North |
| 18 | Thu 7 Mar 2013 | 42-1 v FC Halifax TownFC Halifax Town 1-2 Harrogate Town | Blue Square Bet North |
| 19 | Tue 12 Mar 2013 | 42-2 v Bishop's StortfordHarrogate Town 2-2 Bishop's Stortford | Blue Square Bet North |
| 20 | Sat 16 Mar 2013 | 42-0 v Corby TownCorby Town 0-2 Harrogate Town | Blue Square Bet North |
| 21 | Tue 19 Mar 2013 | 42-0 v Bishop's StortfordBishop's Stortford 0-2 Harrogate Town | Blue Square Bet North |
| 22 | Sat 6 Apr 2013 | 2-4 v Solihull MoorsHarrogate Town 2-4 Solihull Moors | Blue Square Bet North |
| 23 | Tue 9 Apr 2013 | 1-0 v Gloucester CityHarrogate Town 1-0 Gloucester City | Blue Square Bet North |
| 24 | Sat 13 Apr 2013 | 0-0 v Oxford CityOxford City 0-0 Harrogate Town | Blue Square Bet North |
| 25 | Tue 16 Apr 2013 | 0-2 v Solihull MoorsSolihull Moors 2-0 Harrogate Town | Blue Square Bet North |
| 26 | Thu 18 Apr 2013 | 1-1 v FC Halifax TownHarrogate Town 1-1 FC Halifax Town | Blue Square Bet North |
| 27 | Sat 27 Apr 2013 | 1-0 v Vauxhall MotorsVauxhall Motors 0-1 Harrogate Town | Blue Square Bet North |
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