| 1 | Sat 6 Aug 2016 | 53-1 v Southend UnitedSouthend United 1-3 Gillingham | Sky Bet League One |
| 2 | Tue 9 Aug 2016 | 53-1 v Southend UnitedSouthend United 1-3 Gillingham | EFL Cup First Round |
| 3 | Tue 16 Aug 2016 | 51-1 v Swindon TownGillingham 1-1 Swindon Town | Sky Bet League One |
| 4 | Sat 20 Aug 2016 | 50-5 v Scunthorpe UnitedScunthorpe United 5-0 Gillingham | Sky Bet League One |
| 5 | Tue 23 Aug 2016 | 52-1 v WatfordWatford 1-2 Gillingham | EFL Cup Second Round |
| 6 | Sat 27 Aug 2016 | 53-2 v Shrewsbury TownShrewsbury Town 2-3 Gillingham | Sky Bet League One |
| 7 | Tue 30 Aug 2016 | 51-2 v Luton TownGillingham 1-2 Luton Town | Checkatrade Trophy Southern Group H |
| 8 | Sun 4 Sep 2016 | 51-2 v Sheffield UnitedGillingham 1-2 Sheffield United | Sky Bet League One |
| 9 | Sat 10 Sep 2016 | 51-1 v Bradford CityGillingham 1-1 Bradford City | Sky Bet League One |
| 10 | Sat 17 Sep 2016 | 51-2 v Port ValePort Vale 2-1 Gillingham | Sky Bet League One |
| 11 | Wed 21 Sep 2016 | 50-5 v Tottenham HotspurTottenham Hotspur 5-0 Gillingham | EFL Cup Third Round |
| 12 | Sat 24 Sep 2016 | 52-1 v Coventry CityGillingham 2-1 Coventry City | Sky Bet League One |
| 13 | Tue 27 Sep 2016 | 53-3 v ChesterfieldChesterfield 3-3 Gillingham | Sky Bet League One |
| 14 | Sat 1 Oct 2016 | 50-2 v AFC WimbledonAFC Wimbledon 2-0 Gillingham | Sky Bet League One |
| 15 | Sat 8 Oct 2016 | 51-2 v Oldham AthleticGillingham 1-2 Oldham Athletic | Sky Bet League One |
| 16 | Sat 15 Oct 2016 | 51-2 v Bristol RoversBristol Rovers 2-1 Gillingham | Sky Bet League One |
| 17 | Tue 18 Oct 2016 | 51-1 v WalsallGillingham 1-1 Walsall | Sky Bet League One |
| 18 | Sat 22 Oct 2016 | 51-1 v Charlton AthleticGillingham 1-1 Charlton Athletic | Sky Bet League One |
| 19 | Sat 29 Oct 2016 | 51-2 v Fleetwood TownFleetwood Town 2-1 Gillingham | Sky Bet League One |
| 20 | Sat 5 Nov 2016 | 52-2 v Brackley TownGillingham 2-2 Brackley Town | Emirates FA Cup First Round |
| 21 | Sat 12 Nov 2016 | 52-1 v Northampton TownGillingham 2-1 Northampton Town | Sky Bet League One |
| 22 | Wed 16 Nov 2016 | 53-4 v Brackley TownBrackley Town 4-3 Gillingham | Emirates FA Cup First Round |
| 23 | Sat 19 Nov 2016 | 52-1 v WalsallWalsall 1-2 Gillingham | Sky Bet League One |
| 24 | Tue 22 Nov 2016 | 50-1 v Oxford UnitedOxford United 1-0 Gillingham | Sky Bet League One |
| 25 | Sat 26 Nov 2016 | 53-0 v RochdaleGillingham 3-0 Rochdale | Sky Bet League One |
| 26 | Mon 12 Dec 2016 | 50-4 v Bolton WanderersBolton Wanderers 4-0 Gillingham | Sky Bet League One |
| 27 | Sat 17 Dec 2016 | 51-0 v Milton Keynes DonsGillingham 1-0 Milton Keynes Dons | Sky Bet League One |
| 28 | Mon 26 Dec 2016 | 51-1 v Peterborough UnitedPeterborough United 1-1 Gillingham | Sky Bet League One |
| 29 | Fri 30 Dec 2016 | 51-2 v MillwallMillwall 2-1 Gillingham | Sky Bet League One |
| 30 | Mon 2 Jan 2017 | 50-1 v Oxford UnitedGillingham 0-1 Oxford United | Sky Bet League One |
| 31 | Sat 14 Jan 2017 | 50-1 v Oldham AthleticOldham Athletic 1-0 Gillingham | Sky Bet League One |
| 32 | Sat 21 Jan 2017 | 52-2 v Sheffield UnitedSheffield United 2-2 Gillingham | Sky Bet League One |
| 33 | Sat 28 Jan 2017 | 51-1 v Shrewsbury TownGillingham 1-1 Shrewsbury Town | Sky Bet League One |
| 34 | Sat 4 Feb 2017 | 52-2 v Bradford CityBradford City 2-2 Gillingham | Sky Bet League One |
| 35 | Sat 11 Feb 2017 | 51-1 v Port ValeGillingham 1-1 Port Vale | Sky Bet League One |
| 36 | Tue 14 Feb 2017 | 51-1 v ChesterfieldGillingham 1-1 Chesterfield | Sky Bet League One |
| 37 | Sat 18 Feb 2017 | 51-2 v Coventry CityCoventry City 2-1 Gillingham | Sky Bet League One |
| 38 | Tue 21 Feb 2017 | 52-2 v AFC WimbledonGillingham 2-2 AFC Wimbledon | Sky Bet League One |
| 39 | Sat 25 Feb 2017 | 52-1 v Southend UnitedGillingham 2-1 Southend United | Sky Bet League One |
| 40 | Tue 28 Feb 2017 | 51-3 v Swindon TownSwindon Town 3-1 Gillingham | Sky Bet League One |
| 41 | Sat 4 Mar 2017 | 52-1 v BuryBury 1-2 Gillingham | Sky Bet League One |
| 42 | Sat 11 Mar 2017 | 53-2 v Scunthorpe UnitedGillingham 3-2 Scunthorpe United | Sky Bet League One |
| 43 | Tue 14 Mar 2017 | 50-4 v Bolton WanderersGillingham 0-4 Bolton Wanderers | Sky Bet League One |
| 44 | Sat 18 Mar 2017 | 51-4 v RochdaleRochdale 4-1 Gillingham | Sky Bet League One |
| 45 | Sat 25 Mar 2017 | 50-1 v Peterborough UnitedGillingham 0-1 Peterborough United | Sky Bet League One |
| 46 | Sat 1 Apr 2017 | 52-3 v Milton Keynes DonsMilton Keynes Dons 3-2 Gillingham | Sky Bet League One |
| 47 | Sat 8 Apr 2017 | 51-1 v MillwallGillingham 1-1 Millwall | Sky Bet League One |
| 48 | Fri 14 Apr 2017 | 53-1 v Bristol RoversGillingham 3-1 Bristol Rovers | Sky Bet League One |
| 49 | Mon 17 Apr 2017 | 50-3 v Charlton AthleticCharlton Athletic 3-0 Gillingham | Sky Bet League One |
| 50 | Sat 22 Apr 2017 | 52-3 v Fleetwood TownGillingham 2-3 Fleetwood Town | Sky Bet League One |
| 51 | Sun 30 Apr 2017 | 50-0 v Northampton TownNorthampton Town 0-0 Gillingham | Sky Bet League One |
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