| 1 | Sat 8 Oct 2016 | 1-2 v Oldham AthleticGillingham 1-2 Oldham Athletic | Sky Bet League One |
| 2 | Sat 15 Oct 2016 | 1-2 v Bristol RoversBristol Rovers 2-1 Gillingham | Sky Bet League One |
| 3 | Tue 18 Oct 2016 | 1-1 v WalsallGillingham 1-1 Walsall | Sky Bet League One |
| 4 | Sat 22 Oct 2016 | 1-1 v Charlton AthleticGillingham 1-1 Charlton Athletic | Sky Bet League One |
| 5 | Sat 29 Oct 2016 | 1-2 v Fleetwood TownFleetwood Town 2-1 Gillingham | Sky Bet League One |
| 6 | Wed 16 Nov 2016 | 3-4 v Brackley TownBrackley Town 4-3 Gillingham | Emirates FA Cup First Round |
| 7 | Sat 14 Jan 2017 | 40-1 v Oldham AthleticOldham Athletic 1-0 Gillingham | Sky Bet League One |
| 8 | Sat 21 Jan 2017 | 42-2 v Sheffield UnitedSheffield United 2-2 Gillingham | Sky Bet League One |
| 9 | Sat 4 Feb 2017 | 42-2 v Bradford CityBradford City 2-2 Gillingham | Sky Bet League One |
| 10 | Sat 11 Feb 2017 | 41-1 v Port ValeGillingham 1-1 Port Vale | Sky Bet League One |
| 11 | Sat 18 Feb 2017 | 41-2 v Coventry CityCoventry City 2-1 Gillingham | Sky Bet League One |
| 12 | Tue 21 Feb 2017 | 42-2 v AFC WimbledonGillingham 2-2 AFC Wimbledon | Sky Bet League One |
| 13 | Sat 11 Mar 2017 | 43-2 v Scunthorpe UnitedGillingham 3-2 Scunthorpe United | Sky Bet League One |
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