| 1 | Tue 14 Aug 2012 | 62-1 v Bristol CityBristol City 1-2 Gillingham | Capital One Cup First Round |
| 2 | Sat 18 Aug 2012 | 63-1 v Bradford CityGillingham 3-1 Bradford City | npower League Two |
| 3 | Tue 21 Aug 2012 | 61-0 v Wycombe WanderersWycombe Wanderers 0-1 Gillingham | npower League Two |
| 4 | Sat 1 Sep 2012 | 61-1 v ChesterfieldGillingham 1-1 Chesterfield | npower League Two |
| 5 | Tue 4 Sep 2012 | 62-3 v Crawley TownCrawley Town 3-2 Gillingham | Johnstone's Paint Trophy First Round |
| 6 | Sat 8 Sep 2012 | 63-1 v BarnetBarnet 1-3 Gillingham | npower League Two |
| 7 | Sat 22 Sep 2012 | 62-0 v Port ValePort Vale 0-2 Gillingham | npower League Two |
| 8 | Sat 29 Sep 2012 | 61-2 v RochdaleGillingham 1-2 Rochdale | npower League Two |
| 9 | Tue 2 Oct 2012 | 62-1 v Northampton TownNorthampton Town 1-2 Gillingham | npower League Two |
| 10 | Sat 6 Oct 2012 | 60-0 v Oxford UnitedOxford United 0-0 Gillingham | npower League Two |
| 11 | Sat 20 Oct 2012 | 64-1 v Burton AlbionGillingham 4-1 Burton Albion | npower League Two |
| 12 | Tue 23 Oct 2012 | 61-2 v Torquay UnitedTorquay United 2-1 Gillingham | npower League Two |
| 13 | Sat 27 Oct 2012 | 61-0 v AFC WimbledonAFC Wimbledon 0-1 Gillingham | npower League Two |
| 14 | Sat 10 Nov 2012 | 62-2 v Plymouth ArgylePlymouth Argyle 2-2 Gillingham | npower League Two |
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