| 1 | Sat 18 Aug 2012 | 2-1 v Bishop's StortfordBishop's Stortford 1-2 FC Halifax Town | Blue Square Bet North |
| 2 | Sat 25 Aug 2012 | 5-1 v WorkingtonFC Halifax Town 5-1 Workington | Blue Square Bet North |
| 3 | Mon 27 Aug 2012 | 1-1 v Bradford Park AvenueBradford Park Avenue 1-1 FC Halifax Town | Blue Square Bet North |
| 4 | Sat 1 Sep 2012 | 3-1 v Oxford CityFC Halifax Town 3-1 Oxford City | Blue Square Bet North |
| 5 | Wed 5 Sep 2012 | 1-2 v ChesterChester 2-1 FC Halifax Town | Blue Square Bet North |
| 6 | Sat 8 Sep 2012 | 2-0 v Hinckley UnitedHinckley United 0-2 FC Halifax Town | Blue Square Bet North |
| 7 | Sat 15 Sep 2012 | 5-0 v Gloucester CityFC Halifax Town 5-0 Gloucester City | Blue Square Bet North |
| 8 | Sat 29 Sep 2012 | 1-0 v HistonHiston 0-1 FC Halifax Town | Blue Square Bet North |
| 9 | Sat 27 Oct 2012 | 0-0 v Brackley TownBrackley Town 0-0 FC Halifax Town | Blue Square Bet North |
| 10 | Sat 8 Dec 2012 | 1-0 v Worcester CityWorcester City 0-1 FC Halifax Town | Blue Square Bet North |
| 11 | Wed 26 Dec 2012 | 3-1 v Gainsborough TrinityFC Halifax Town 3-1 Gainsborough Trinity | Blue Square Bet North |
| 12 | Tue 1 Jan 2013 | 0-3 v Gainsborough TrinityGainsborough Trinity 3-0 FC Halifax Town | Blue Square Bet North |
| 13 | Tue 8 Jan 2013 | 0-0 v Solihull MoorsFC Halifax Town 0-0 Solihull Moors | Blue Square Bet North |
| 14 | Sat 2 Feb 2013 | 5-1 v Corby TownCorby Town 1-5 FC Halifax Town | Blue Square Bet North |
| 15 | Sat 9 Feb 2013 | 3-3 v HistonFC Halifax Town 3-3 Histon | Blue Square Bet North |
| 16 | Sat 16 Feb 2013 | 6-0 v DroylsdenDroylsden 0-6 FC Halifax Town | Blue Square Bet North |
| 17 | Tue 19 Feb 2013 | 2-1 v Gloucester CityGloucester City 1-2 FC Halifax Town | Blue Square Bet North |
| 18 | Sat 23 Feb 2013 | 0-0 v Stalybridge CelticFC Halifax Town 0-0 Stalybridge Celtic | Blue Square Bet North |
| 19 | Tue 26 Feb 2013 | 3-1 v Vauxhall MotorsVauxhall Motors 1-3 FC Halifax Town | Blue Square Bet North |
| 20 | Sat 2 Mar 2013 | 5-0 v Worcester CityFC Halifax Town 5-0 Worcester City | Blue Square Bet North |
| 21 | Thu 7 Mar 2013 | 1-2 v Harrogate TownFC Halifax Town 1-2 Harrogate Town | Blue Square Bet North |
| 22 | Sat 9 Mar 2013 | 3-0 v Solihull MoorsSolihull Moors 0-3 FC Halifax Town | Blue Square Bet North |
| 23 | Sat 16 Mar 2013 | 0-0 v Brackley TownFC Halifax Town 0-0 Brackley Town | Blue Square Bet North |
| 24 | Tue 19 Mar 2013 | 3-0 v Colwyn BayColwyn Bay 0-3 FC Halifax Town | Blue Square Bet North |
| 25 | Sat 30 Mar 2013 | 1-0 v WorkingtonWorkington 0-1 FC Halifax Town | Blue Square Bet North |
| 26 | Mon 1 Apr 2013 | 0-1 v Bradford Park AvenueFC Halifax Town 0-1 Bradford Park Avenue | Blue Square Bet North |
| 27 | Wed 3 Apr 2013 | 1-1 v GuiseleyGuiseley 1-1 FC Halifax Town | Blue Square Bet North |
| 28 | Sat 6 Apr 2013 | 3-4 v AltrinchamFC Halifax Town 3-4 Altrincham | Blue Square Bet North |
| 29 | Thu 11 Apr 2013 | 2-0 v Corby TownFC Halifax Town 2-0 Corby Town | Blue Square Bet North |
| 30 | Sat 13 Apr 2013 | 2-1 v Boston UnitedBoston United 1-2 FC Halifax Town | Blue Square Bet North |
| 31 | Tue 23 Apr 2013 | 0-2 v AltrinchamAltrincham 2-0 FC Halifax Town | Blue Square Bet North |
| 32 | Thu 25 Apr 2013 | 1-1 v ChesterFC Halifax Town 1-1 Chester | Blue Square Bet North |
| 33 | Sat 27 Apr 2013 | 0-1 v Stalybridge CelticStalybridge Celtic 1-0 FC Halifax Town | Blue Square Bet North |
| 34 | Tue 30 Apr 2013 | 1-1 v GuiseleyFC Halifax Town 1-1 Guiseley | Blue Square Bet North Play-off Semi Final |
| 35 | Sat 4 May 2013 | 2-0 v GuiseleyGuiseley 0-2 FC Halifax Town | Blue Square Bet North Play-off Semi Final |
| 36 | Sun 12 May 2013 | 1-0 v Brackley TownBrackley Town 0-1 FC Halifax Town | Blue Square Bet North Play-off Final |
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