| 1 | Sat 1 Sep 2012 | 2-0 v BromleyFarnborough 2-0 Bromley | Blue Square Bet South |
| 2 | Tue 4 Sep 2012 | 2-3 v Maidenhead UnitedMaidenhead United 3-2 Farnborough | Blue Square Bet South |
| 3 | Sat 8 Sep 2012 | 1-3 v Boreham WoodBoreham Wood 3-1 Farnborough | Blue Square Bet South |
| 4 | Sat 15 Sep 2012 | 0-3 v Welling UnitedFarnborough 0-3 Welling United | Blue Square Bet South |
| 5 | Sat 29 Sep 2012 | 1-1 v AFC HornchurchAFC Hornchurch 1-1 Farnborough | Blue Square Bet South |
| 6 | Tue 2 Oct 2012 | 6-2 v EastleighFarnborough 6-2 Eastleigh | Blue Square Bet South |
| 7 | Sat 20 Oct 2012 | 1-0 v Havant & WaterloovilleHavant & Waterlooville 0-1 Farnborough | Blue Square Bet South |
| 8 | Sat 27 Oct 2012 | 2-3 v Hayes & Yeading UnitedHayes & Yeading United 3-2 Farnborough | Blue Square Bet South |
| 9 | Tue 30 Oct 2012 | 4-1 v Truro CityFarnborough 4-1 Truro City | Blue Square Bet South |
| 10 | Sat 3 Nov 2012 | 2-3 v Bath CityBath City 3-2 Farnborough | Blue Square Bet South |
| 11 | Sat 17 Nov 2012 | 3-1 v Staines TownFarnborough 3-1 Staines Town | Blue Square Bet South |
| 12 | Sat 8 Dec 2012 | 3-1 v BromleyBromley 1-3 Farnborough | Blue Square Bet South |
| 13 | Sat 15 Dec 2012 | 0-3 v Boreham WoodFarnborough 0-3 Boreham Wood | Blue Square Bet South |
| 14 | Wed 26 Dec 2012 | 2-1 v Basingstoke TownFarnborough 2-1 Basingstoke Town | Blue Square Bet South |
| 15 | Tue 1 Jan 2013 | 2-6 v Basingstoke TownBasingstoke Town 6-2 Farnborough | Blue Square Bet South |
| 16 | Sat 12 Jan 2013 | 5-2 v Dover AthleticFarnborough 5-2 Dover Athletic | Blue Square Bet South |
| 17 | Sat 26 Jan 2013 | 1-3 v EastleighEastleigh 3-1 Farnborough | Blue Square Bet South |
| 18 | Tue 29 Jan 2013 | 2-1 v Salisbury CityFarnborough 2-1 Salisbury City | Blue Square Bet South |
| 19 | Sat 2 Feb 2013 | 3-2 v Tonbridge AngelsTonbridge Angels 2-3 Farnborough | Blue Square Bet South |
| 20 | Tue 5 Feb 2013 | 0-1 v Bath CityFarnborough 0-1 Bath City | Blue Square Bet South |
| 21 | Sat 16 Feb 2013 | 4-1 v Hayes & Yeading UnitedFarnborough 4-1 Hayes & Yeading United | Blue Square Bet South |
| 22 | Tue 19 Feb 2013 | 0-2 v Welling UnitedWelling United 2-0 Farnborough | Blue Square Bet South |
| 23 | Sat 23 Feb 2013 | 0-1 v Eastbourne BoroughFarnborough 0-1 Eastbourne Borough | Blue Square Bet South |
| 24 | Tue 5 Mar 2013 | 1-2 v Billericay TownBillericay Town 2-1 Farnborough | Blue Square Bet South |
| 25 | Sat 9 Mar 2013 | 1-0 v Eastbourne BoroughEastbourne Borough 0-1 Farnborough | Blue Square Bet South |
| 26 | Sat 16 Mar 2013 | 1-0 v Sutton UnitedSutton United 0-1 Farnborough | Blue Square Bet South |
| 27 | Mon 18 Mar 2013 | 0-6 v Chelmsford CityChelmsford City 6-0 Farnborough | Blue Square Bet South |
| 28 | Tue 26 Mar 2013 | 0-2 v Dorchester TownDorchester Town 2-0 Farnborough | Blue Square Bet South |
| 29 | Sat 30 Mar 2013 | 1-1 v Weston-super-MareWeston-super-Mare 1-1 Farnborough | Blue Square Bet South |
| 30 | Mon 1 Apr 2013 | 2-1 v Maidenhead UnitedFarnborough 2-1 Maidenhead United | Blue Square Bet South |
| 31 | Sat 6 Apr 2013 | 2-1 v Staines TownStaines Town 1-2 Farnborough | Blue Square Bet South |
| 32 | Sat 20 Apr 2013 | 3-3 v Truro CityTruro City 3-3 Farnborough | Blue Square Bet South |
| 33 | Tue 23 Apr 2013 | 4-3 v Billericay TownFarnborough 4-3 Billericay Town | Blue Square Bet South |
| 34 | Sat 27 Apr 2013 | 3-1 v Chelmsford CityFarnborough 3-1 Chelmsford City | Blue Square Bet South |
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