| 1 | Sat 18 Aug 2012 | 2-2 v Dover AthleticDover Athletic 2-2 Farnborough | Blue Square Bet South |
| 2 | Tue 21 Aug 2012 | 2-1 v Weston-super-MareFarnborough 2-1 Weston-super-Mare | Blue Square Bet South |
| 3 | Sat 25 Aug 2012 | 1-1 v Dorchester TownFarnborough 1-1 Dorchester Town | Blue Square Bet South |
| 4 | Mon 27 Aug 2012 | 0-1 v Salisbury CitySalisbury City 1-0 Farnborough | Blue Square Bet South |
| 5 | Sat 1 Sep 2012 | 2-0 v BromleyFarnborough 2-0 Bromley | Blue Square Bet South |
| 6 | Tue 4 Sep 2012 | 2-3 v Maidenhead UnitedMaidenhead United 3-2 Farnborough | Blue Square Bet South |
| 7 | Sat 8 Sep 2012 | 1-3 v Boreham WoodBoreham Wood 3-1 Farnborough | Blue Square Bet South |
| 8 | Sat 15 Sep 2012 | 0-3 v Welling UnitedFarnborough 0-3 Welling United | Blue Square Bet South |
| 9 | Sat 29 Sep 2012 | 1-1 v AFC HornchurchAFC Hornchurch 1-1 Farnborough | Blue Square Bet South |
| 10 | Tue 2 Oct 2012 | 6-2 v EastleighFarnborough 6-2 Eastleigh | Blue Square Bet South |
| 11 | Sat 20 Oct 2012 | 1-0 v Havant & WaterloovilleHavant & Waterlooville 0-1 Farnborough | Blue Square Bet South |
| 12 | Sat 27 Oct 2012 | 2-3 v Hayes & Yeading UnitedHayes & Yeading United 3-2 Farnborough | Blue Square Bet South |
| 13 | Tue 30 Oct 2012 | 4-1 v Truro CityFarnborough 4-1 Truro City | Blue Square Bet South |
| 14 | Sat 3 Nov 2012 | 2-3 v Bath CityBath City 3-2 Farnborough | Blue Square Bet South |
| 15 | Sat 17 Nov 2012 | 3-1 v Staines TownFarnborough 3-1 Staines Town | Blue Square Bet South |
| 16 | Sat 8 Dec 2012 | 3-1 v BromleyBromley 1-3 Farnborough | Blue Square Bet South |
| 17 | Sat 15 Dec 2012 | 0-3 v Boreham WoodFarnborough 0-3 Boreham Wood | Blue Square Bet South |
| 18 | Wed 26 Dec 2012 | 2-1 v Basingstoke TownFarnborough 2-1 Basingstoke Town | Blue Square Bet South |
| 19 | Tue 1 Jan 2013 | 2-6 v Basingstoke TownBasingstoke Town 6-2 Farnborough | Blue Square Bet South |
| 20 | Sat 12 Jan 2013 | 5-2 v Dover AthleticFarnborough 5-2 Dover Athletic | Blue Square Bet South |
| 21 | Tue 29 Jan 2013 | 2-1 v Salisbury CityFarnborough 2-1 Salisbury City | Blue Square Bet South |
| 22 | Sat 2 Feb 2013 | 3-2 v Tonbridge AngelsTonbridge Angels 2-3 Farnborough | Blue Square Bet South |
| 23 | Tue 26 Mar 2013 | 0-2 v Dorchester TownDorchester Town 2-0 Farnborough | Blue Square Bet South |
| 24 | Sat 30 Mar 2013 | 1-1 v Weston-super-MareWeston-super-Mare 1-1 Farnborough | Blue Square Bet South |
| 25 | Mon 1 Apr 2013 | 2-1 v Maidenhead UnitedFarnborough 2-1 Maidenhead United | Blue Square Bet South |
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